An Accurate Prediction of Hydration Free Energies by Combination of Molecular Integral Equations Theory with Structural Descriptors

被引:71
|
作者
Ratkova, Ekaterina L. [1 ]
Chuev, Gennady N. [1 ,2 ]
Sergiievskyi, Volodymyr P. [1 ]
Fedorov, Maxim V. [1 ]
机构
[1] Max Planck Inst Math Sci, D-04103 Leipzig, Germany
[2] Russian Acad Sci, Inst Theoret & Expt Biophys, Pushchino 142290, Moscow Region, Russia
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2010年 / 114卷 / 37期
关键词
INTERACTION SITE MODEL; SOLVATION FREE-ENERGY; REPULSIVE BRIDGE CORRECTION; CRYSTAL-LATTICE ENERGY; SELF-CONSISTENT-FIELD; FORCE-FIELD; THERMODYNAMIC APPROACH; AQUEOUS SOLUBILITY; DRUG SOLUBILITY; POLAR-MOLECULES;
D O I
10.1021/jp103955r
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this work, we report a novel method for the estimation of the hydration free energy of organic molecules, the structural descriptors correction (SDC) model. The method is based on a combination of the reference interaction site model (RISM) with several empirical corrections. The model requires only a small number of chemical descriptors associated with the main features of the chemical structure of solutes: excluded volume, branch, double bond, benzene ring, hydroxyl group, halogen atom, aldehyde group, ketone group, ether group, and phenol fragment. The optimum model was selected after testing of different RISM free energy expressions on a training set of 65 molecules. We show that the correction parameters of the SDC model are transferable between different chemical classes, which allows one to cover a wide range of organic solutes. The new model substantially increases the accuracy of calculated HFEs by RISM giving the standard deviation of the error for a test set of 120 organic molecules around 1.2 kcal/mol.
引用
收藏
页码:12068 / 12079
页数:12
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