Multi-omics approaches to disease

被引:1494
作者
Hasin, Yehudit [1 ,3 ]
Seldin, Marcus [1 ]
Lusis, Aldons [1 ,2 ,3 ]
机构
[1] Univ Calif Los Angeles, Dept Med, 10833 Le Conte Ave,A2-237 CHS, Los Angeles, CA 90095 USA
[2] Immunol & Mol Genet, Dept Microbiol, 10833 Le Conte Ave,A2-237 CHS, Los Angeles, CA 90095 USA
[3] Univ Calif Los Angeles, Dept Human Genet, 10833 Le Conte Ave,A2-237 CHS, Los Angeles, CA 90095 USA
关键词
GENOME-WIDE ASSOCIATION; LONG NONCODING RNA; ENU MOUSE MUTAGENESIS; GENE-EXPRESSION; PROTEOMIC ANALYSIS; MASS-SPECTROMETRY; CIRCULAR RNAS; DIFFERENTIAL EXPRESSION; MICROBIOTA COMPOSITION; TRANSCRIPTOME ANALYSIS;
D O I
10.1186/s13059-017-1215-1
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
High-throughput technologies have revolutionized medical research. The advent of genotyping arrays enabled large-scale genome-wide association studies and methods for examining global transcript levels, which gave rise to the field of "integrative genetics". Other omics technologies, such as proteomics and metabolomics, are now often incorporated into the everyday methodology of biological researchers. In this review, we provide an overview of such omics technologies and focus on methods for their integration across multiple omics layers. As compared to studies of a single omics type, multi-omics offers the opportunity to understand the flow of information that underlies disease.
引用
收藏
页数:15
相关论文
共 179 条
[51]   Genetics Meets Metabolomics: A Genome-Wide Association Study of Metabolite Profiles in Human Serum [J].
Gieger, Christian ;
Geistlinger, Ludwig ;
Altmaier, Elisabeth ;
de Angelis, Martin Hrabe ;
Kronenberg, Florian ;
Meitinger, Thomas ;
Mewes, Hans-Werner ;
Wichmann, H. -Erich ;
Weinberger, Klaus M. ;
Adamski, Jerzy ;
Illig, Thomas ;
Suhre, Karsten .
PLOS GENETICS, 2008, 4 (11)
[52]  
Gilad Yoav, 2015, F1000Res, V4, P121, DOI 10.12688/f1000research.6536.1
[53]   Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease [J].
Gjoneska, Elizabeta ;
Pfenning, Andreas R. ;
Mathys, Hansruedi ;
Quon, Gerald ;
Kundaje, Anshul ;
Tsai, Li-Huei ;
Kellis, Manolis .
NATURE, 2015, 518 (7539) :365-369
[54]   Single-cell genome-wide bisulfite sequencing uncovers extensive heterogeneity in the mouse liver methylome [J].
Gravina, Silvia ;
Dong, Xiao ;
Yu, Bo ;
Vijg, Jan .
GENOME BIOLOGY, 2016, 17
[55]   Mouse Phenome Database [J].
Grubb, Stephen C. ;
Bult, Carol J. ;
Bogue, Molly A. .
NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D825-D834
[56]   Single-cell messenger RNA sequencing reveals rare intestinal cell types [J].
Grun, Dominic ;
Lyubimova, Anna ;
Kester, Lennart ;
Wiebrands, Kay ;
Basak, Onur ;
Sasaki, Nobuo ;
Clevers, Hans ;
van Oudenaarden, Alexander .
NATURE, 2015, 525 (7568) :251-+
[57]   Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing [J].
Guo, Hongshan ;
Zhu, Ping ;
Wu, Xinglong ;
Li, Xianlong ;
Wen, Lu ;
Tang, Fuchou .
GENOME RESEARCH, 2013, 23 (12) :2126-2135
[58]   Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis [J].
Gupta, Rajnish A. ;
Shah, Nilay ;
Wang, Kevin C. ;
Kim, Jeewon ;
Horlings, Hugo M. ;
Wong, David J. ;
Tsai, Miao-Chih ;
Hung, Tiffany ;
Argani, Pedram ;
Rinn, John L. ;
Wang, Yulei ;
Brzoska, Pius ;
Kong, Benjamin ;
Li, Rui ;
West, Robert B. ;
van de Vijver, Marc J. ;
Sukumar, Saraswati ;
Chang, Howard Y. .
NATURE, 2010, 464 (7291) :1071-U148
[59]   Integrative approaches for large-scale transcriptome-wide association studies [J].
Gusev, Alexander ;
Ko, Arthur ;
Shi, Huwenbo ;
Bhatia, Gaurav ;
Chung, Wonil ;
Penninx, Brenda W. J. H. ;
Jansen, Rick ;
de Geus, Eco J. C. ;
Boomsma, Dorret I. ;
Wright, Fred A. ;
Sullivan, Patrick F. ;
Nikkola, Elina ;
Alvarez, Marcus ;
Civelek, Mete ;
Lusis, Aldons J. ;
Lehtimaki, Terho ;
Raitoharju, Emma ;
Kahonen, Mika ;
Seppala, Ilkka ;
Raitakari, Olli T. ;
Kuusisto, Johanna ;
Laakso, Markku ;
Price, Alkes L. ;
Pajukanta, Paivi ;
Pasaniuc, Bogdan .
NATURE GENETICS, 2016, 48 (03) :245-252
[60]   The nexus of chromatin regulation and intermediary metabolism [J].
Gut, Philipp ;
Verdin, Eric .
NATURE, 2013, 502 (7472) :489-498