PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids

被引:371
作者
Laskowski, RA [1 ]
Chistyakov, VV [1 ]
Thornton, JM [1 ]
机构
[1] European Bioinformat Inst, Cambridge CB10 1SD, England
基金
英国惠康基金;
关键词
D O I
10.1093/nar/gki001
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
PDBsum is a database of mainly pictorial summaries of the 3D structures of proteins and nucleic acids in the Protein Data Bank. Its pages aim to provide an at-a-glance view of the contents of every 3D structure, plus detailed structural analyses of each protein chain, DNA-RNA chain and any bound ligands and metals. In the past year, the database has been significantly improved, in terms of both appearance and new content. Moreover, it has moved to its new address at http://www.ebi.ac.uk/thornton-srv/databases/pdbsum.
引用
收藏
页码:D266 / D268
页数:3
相关论文
共 15 条
  • [1] The ENZYME database in 2000
    Bairoch, A
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 304 - 305
  • [2] The Protein Data Bank
    Berman, HM
    Westbrook, J
    Feng, Z
    Gilliland, G
    Bhat, TN
    Weissig, H
    Shindyalov, IN
    Bourne, PE
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 235 - 242
  • [3] BIELKA H, 1992, EC ENZYME NOMENCLATU
  • [4] ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information
    Glaser, F
    Pupko, T
    Paz, I
    Bell, RE
    Bechor-Shental, D
    Martz, E
    Ben-Tal, N
    [J]. BIOINFORMATICS, 2003, 19 (01) : 163 - 164
  • [5] Recent improvements to the PROSITE database
    Hulo, N
    Sigrist, CJA
    Le Saux, V
    Langendijk-Genevaux, PS
    Bordoli, L
    Gattiker, A
    De Castro, E
    Bucher, P
    Bairoch, A
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D134 - D137
  • [6] Hutchinson EG, 1996, PROTEIN SCI, V5, P212
  • [7] KEGG: Kyoto Encyclopedia of Genes and Genomes
    Kanehisa, M
    Goto, S
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 27 - 30
  • [8] Three-dimensional structure analysis of PROSITE patterns
    Kasuya, A
    Thornton, JM
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 286 (05) : 1673 - 1691
  • [9] MOLSCRIPT - A PROGRAM TO PRODUCE BOTH DETAILED AND SCHEMATIC PLOTS OF PROTEIN STRUCTURES
    KRAULIS, PJ
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1991, 24 : 946 - 950
  • [10] PDBsum: a Web-based database of summaries and analyses of all PDB structures
    Laskowski, RA
    Hutchinson, EG
    Michie, AD
    Wallace, AC
    Jones, ML
    Thornton, JM
    [J]. TRENDS IN BIOCHEMICAL SCIENCES, 1997, 22 (12) : 488 - 490