Histone variants take center stage in shaping the epigenome

被引:50
作者
Borg, Michael [1 ]
Jiang, Danhua [2 ,3 ]
Berger, Frederic [1 ]
机构
[1] Austrian Acad Sci, Gregor Mendel Inst, Vienna Bioctr, Dr Bohr Gasse 3, A-1030 Vienna, Austria
[2] Chinese Acad Sci, Innovat Acad Seed Design, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing, Peoples R China
[3] Univ Chinese Acad Sci, Beijing, Peoples R China
基金
中国国家自然科学基金; 国家重点研发计划; 奥地利科学基金会;
关键词
ARABIDOPSIS-THALIANA; CHROMATIN-STRUCTURE; DNA METHYLATION; H2A VARIANTS; H3.3; HETEROCHROMATIN; DEPOSITION; GENOME; DOMAIN; ROLES;
D O I
10.1016/j.pbi.2020.101991
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The dynamic properties of the nucleosome are central to genomic activity. Variants of the core histones that form the nucleosome play a pivotal role in modulating nucleosome structure and function. Despite often small differences in sequence, histone variants display remarkable diversity in genomic deposition and post-translational modification. Here, we summarize the roles played by histone variants in the establishment, maintenance and reprogramming of plant chromatin landscapes, with a focus on histone H3 variants. Deposition of replicative H3.1 during DNA replication controls epigenetic inheritance, while local replacement of H3.1 with H3.3 marks cells undergoing terminal differentiation. Deposition of specialized H3 variants in specific cell types is emerging as a novel mechanism of selective epigenetic reprogramming during the plant life cycle.
引用
收藏
页数:9
相关论文
共 97 条
[61]   Embryo and Endosperm Inherit Distinct Chromatin and Transcriptional States from the Female Gametes in Arabidopsis [J].
Pillot, Marion ;
Baroux, Celia ;
Arteaga Vazquez, Mario ;
Autran, Daphne ;
Leblanc, Olivier ;
Philippe Vielle-Calzada, Jean ;
Grossniklaus, Ueli ;
Grimanelli, Daniel .
PLANT CELL, 2010, 22 (02) :307-320
[62]   The evolutionary history of histone H3 suggests a deep eukaryotic root of chromatin modifying mechanisms [J].
Postberg, Jan ;
Forcob, Sakeh ;
Chang, Wei-Jen ;
Lipps, Hans J. .
BMC EVOLUTIONARY BIOLOGY, 2010, 10
[63]   Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition [J].
Potok, Magdalena E. ;
Wang, Yafei ;
Xu, Linhao ;
Zhong, Zhenhui ;
Liu, Wanlu ;
Feng, Suhua ;
Naranbaatar, Bilguudei ;
Rayatpisheh, Shima ;
Wang, Zonghua ;
Wohlschlegel, James A. ;
Ausin, Israel ;
Jacobsen, Steven E. .
NATURE COMMUNICATIONS, 2019, 10 (1)
[64]   Similar yet critically different: the distribution, dynamics and function of histone variants [J].
Probst, Aline, V ;
Desvoyes, Benedicte ;
Gutierrez, Crisanto .
JOURNAL OF EXPERIMENTAL BOTANY, 2020, 71 (17) :5191-5204
[65]   The many faces of chromatin assembly factor 1 [J].
Ramirez-Parra, Elena ;
Gutierrez, Crisanto .
TRENDS IN PLANT SCIENCE, 2007, 12 (12) :570-576
[66]   Accurate Recycling of Parental Histones Reproduces the Histone Modification Landscape during DNA Replication [J].
Reveron-Gomez, Nazaret ;
Gonzalez-Aguilera, Cristina ;
Stewart-Morgan, Kathleen R. ;
Petryk, Nataliya ;
Flury, Valentin ;
Graziano, Simona ;
Johansen, Jens Vilstrup ;
Jakobsen, Janus Schou ;
Alabert, Constance ;
Groth, Anja .
MOLECULAR CELL, 2018, 72 (02) :239-+
[67]   Integrative epigenomic mapping defines four main chromatin states in Arabidopsis [J].
Roudier, Francois ;
Ahmed, Ikhlak ;
Berard, Caroline ;
Sarazin, Alexis ;
Mary-Huard, Tristan ;
Cortijo, Sandra ;
Bouyer, Daniel ;
Caillieux, Erwann ;
Duvernois-Berthet, Evelyne ;
Al-Shikhley, Liza ;
Giraut, Laurene ;
Despres, Barbara ;
Drevensek, Stephanie ;
Barneche, Fredy ;
Derozier, Sandra ;
Brunaud, Veronique ;
Aubourg, Sebastien ;
Schnittger, Arp ;
Bowler, Chris ;
Martin-Magniette, Marie-Laure ;
Robin, Stephane ;
Caboche, Michel ;
Colot, Vincent .
EMBO JOURNAL, 2011, 30 (10) :1928-1938
[68]   Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis [J].
Rutowicz, Kinga ;
Lirski, Maciej ;
Mermaz, Benoit ;
Teano, Gianluca ;
Schubert, Jasmin ;
Mestiri, Imen ;
Kroten, Magdalena A. ;
Fabrice, Tohnyui Ndinyanka ;
Fritz, Simon ;
Grob, Stefan ;
Ringli, Christoph ;
Cherkezyan, Lusik ;
Barneche, Fredy ;
Jerzmanowski, Andrzej ;
Baroux, Celia .
GENOME BIOLOGY, 2019, 20 (01)
[69]   The nucleosome core particle remembers its position through DNA replication and RNA transcription [J].
Schlissel, Gavin ;
Rine, Jasper .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (41) :20605-20611
[70]   Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte [J].
Schoft, Vera K. ;
Chumak, Nina ;
Choi, Yeonhee ;
Hannon, Mike ;
Garcia-Aguilar, Marcelina ;
Machlicova, Adriana ;
Slusarz, Lucyna ;
Mosiolek, Magdalena ;
Park, Jin-Sup ;
Park, Guen Tae ;
Fischer, Robert L. ;
Tamaru, Hisashi .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (19) :8042-8047