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A Novel Epithelial-Mesenchymal Transition Gene Signature Correlated With Prognosis, and Immune Infiltration in Hepatocellular Carcinoma
被引:6
|作者:
Kong, Weihao
Mao, Zhongxiang
Han, Chen
Ding, Zhenxing
Yuan, Qianqian
Zhang, Gaosong
Li, Chong
Wu, Xuesheng
Chen, Jia
Guo, Manyu
Hong, Shaocheng
Yu, Feng
Liu, Rongqiang
Wang, Xingyu
Zhang, Jianlin
机构:
[1] Department of Emergency Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei
[2] Registration Review Department, Anhui Center for Drug Evaluation & Inspection, Hefei
[3] Department of Emergency Medicine, The First Affiliated Hospital of Anhui Medical University, Hefei
[4] Department of Biochemistry & Molecular Biology, School of Basic Medicine, Anhui Medical University, Hefei
[5] Department Ultrasound, The First Affiliated Hospital of Anhui Medical University, Hefei
[6] The First Clinical Medical College, Anhui Medical University, Anhui Medical University, Hefei
[7] Department of Hepatobiliary Surgery, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou
关键词:
epithelial-mesenchymal transition;
gene signature;
TCGA;
GEO;
ICGC;
hepatocellular carcinoma;
R PACKAGE;
METAANALYSIS;
D O I:
10.3389/fphar.2022.863750
中图分类号:
R9 [药学];
学科分类号:
1007 ;
摘要:
Background: Although many genes related to epithelial-mesenchymal transition (EMT) have been explored in hepatocellular carcinoma (HCC), their prognostic significance still needs further analysis.Methods: Differentially expressed EMT-related genes were obtained through the integrated analysis of 4 Gene expression omnibus (GEO) datasets. The univariate Cox regression and Lasso Cox regression models are utilized to determine the EMT-related gene signature. Based on the results of multivariate Cox regression, a predictive nomogram is established. Time-dependent ROC curve and calibration curve are used to show the distinguishing ability and consistency of the nomogram. Finally, we explored the correlation between EMT risk score and immune immunity.Results: We identified a nine EMT-related gene signature to predict the survival outcome of HCC patients. Based on the EMT risk score's median, HCC patients in each dataset were divided into high and low-risk groups. The survival outcomes of HCC patients in the high-risk group were significantly worse than those in the low-risk group. The prediction nomogram based on the EMT risk score has better distinguishing ability and consistency. High EMT risk score was related to immune infiltration.Conclusion: The nomogram based on the EMT risk score can reliably predict the survival outcome of HCC patients, thereby providing benefits for medical decisions.
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页数:14
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