A Panel of Five-lncRNA Signature as a Potential Biomarker for Predicting Survival in Gastric and Thoracic Cancers

被引:4
作者
Shao, Jiayue [1 ]
Lyu, Wei [2 ]
Zhou, Jiehao [3 ,4 ]
Xu, Wenhui [3 ,4 ]
Wang, Dandan [3 ,4 ]
Liang, Shanshan [3 ,4 ]
Zhao, Jiayin [3 ,4 ]
Qin, Yujing [3 ,4 ]
机构
[1] Harbin Med Univ, Canc Hosp, Dept Med Oncol, Harbin, Peoples R China
[2] Guangdong Women & Children Hosp, Dept Pathol, Guangzhou, Peoples R China
[3] Heilongjiang Prov Hosp, Dept Gastroenterol, Harbin, Peoples R China
[4] Harbin Inst Technol, Heilongjiang Prov Hosp, Dept Gastroenterol, Harbin, Peoples R China
关键词
long non-coding RNA; gastric cancer; overall survival; thoracic malignancy; prognosis; IDENTIFICATION;
D O I
10.3389/fgene.2021.666155
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Dysfunctional long non-coding RNAs (lncRNAs) have been found to have carcinogenic and/or tumor inhibitory effects in the development and progression of cancer, suggesting their potential as new independent biomarkers for cancer diagnosis and prognosis. The exploration of the relationship between lncRNAs and the overall survival (OS) of different cancers opens up new prospects for tumor diagnosis and treatment. In this study, we established a five-lncRNA signature and explored its prognostic efficiency in gastric cancer (GC) and several thoracic malignancies, including breast invasive carcinoma (BRCA), esophageal carcinoma, lung adenocarcinoma, lung squamous cell carcinoma (LUSC), and thymoma (THYM). Cox regression analysis and lasso regression were used to evaluate the relationship between lncRNA expression and survival in different cancer datasets from GEO and TCGA. Kaplan-Meier survival curves indicated that risk scores characterized by a five-lncRNA signature were significantly associated with the OS of GC, BRCA, LUSC, and THYM patients. Functional enrichment analysis showed that these five lncRNAs are involved in known biological pathways related to cancer pathology. In conclusion, the five-lncRNA signature can be used as a prognostic marker to promote the diagnosis and treatment of GC and thymic malignancies.
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页数:11
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共 31 条
[1]   Global surveillance of trends in cancer survival 2000-14 (CONCORD-3): analysis of individual records for 37 513 025 patients diagnosed with one of 18 cancers from 322 population-based registries in 71 countries [J].
Allemani, Claudia ;
Matsuda, Tomohiro ;
Di Carlo, Veronica ;
Harewood, Rhea ;
Matz, Melissa ;
Niksic, Maja ;
Bonaventure, Audrey ;
Valkov, Mikhail ;
Johnson, Christopher J. ;
Esteve, Jacques ;
Ogunbiyi, Olufemi J. ;
Azevedo e Silva, Gulnar ;
Chen, Wan-Qing ;
Eser, Sultan ;
Engholm, Gerda ;
Stiller, Charles A. ;
Monnereau, Alain ;
Woods, Ryan R. ;
Visser, Otto ;
Lim, Gek Hsiang ;
Aitken, Joanne ;
Weir, Hannah K. ;
Coleman, Michel P. .
LANCET, 2018, 391 (10125) :1023-1075
[2]   T Cells in Gastric Cancer: Friends or Foes [J].
Amedei, Amedeo ;
Della Bella, Chiara ;
Silvestri, Elena ;
Prisco, Domenico ;
D'Elios, Mario M. .
CLINICAL & DEVELOPMENTAL IMMUNOLOGY, 2012,
[3]   NCBI GEO: archive for functional genomics data sets-update [J].
Barrett, Tanya ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Evangelista, Carlos ;
Kim, Irene F. ;
Tomashevsky, Maxim ;
Marshall, Kimberly A. ;
Phillippy, Katherine H. ;
Sherman, Patti M. ;
Holko, Michelle ;
Yefanov, Andrey ;
Lee, Hyeseung ;
Zhang, Naigong ;
Robertson, Cynthia L. ;
Serova, Nadezhda ;
Davis, Sean ;
Soboleva, Alexandra .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D991-D995
[4]   Long Noncoding RNAs: Cellular Address Codes in Development and Disease [J].
Batista, Pedro J. ;
Chang, Howard Y. .
CELL, 2013, 152 (06) :1298-1307
[5]   Gastric Metastasis of Invasive Lobular Breast Carcinoma, a Current Diagnostic and Treatment Challenge - A Review [J].
Birla, Rodica ;
Dinu, Daniela ;
Iosif, Cristina ;
Constantinoiu, Silviu .
CHIRURGIA, 2019, 114 (05) :571-578
[6]   New insights into the mechanisms of epithelial-mesenchymal transition and implications for cancer [J].
Dongre, Anushka ;
Weinberg, Robert A. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2019, 20 (02) :69-84
[7]   Effect of perioperative autologous versus allogeneic blood transfusion on the immune system in gastric cancer patients. [J].
Chen G. ;
Zhang F.J. ;
Gong M. ;
Yan M. .
Journal of Zhejiang University SCIENCE B, 2007, 8 (8) :560-565
[8]   Diagnostic, prognostic, and therapeutic significance of long non-coding RNA MALAT1 in cancer [J].
Goyal, Bela ;
Yadav, Shashi Ranjan Mani ;
Awasthee, Nikee ;
Gupta, Sweety ;
Kunnumakkara, Ajaikumar B. ;
Gupta, Subash Chandra .
BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER, 2021, 1875 (02)
[9]   Dynamic TF-lncRNA Regulatory Networks Revealed Prognostic Signatures in the Development of Ovarian Cancer [J].
Guo, Qiuyan ;
Wang, Junwei ;
Gao, Yue ;
Li, Xin ;
Hao, Yangyang ;
Ning, Shangwei ;
Wang, Peng .
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 2020, 8
[10]   Identification of potential prognostic TF-associated lncRNAs for predicting survival in ovarian cancer [J].
Guo, Qiuyan ;
He, Yanan ;
Sun, Liyuan ;
Kong, Congcong ;
Cheng, Yan ;
Wang, Peng ;
Zhang, Guangmei .
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2019, 23 (03) :1840-1851