Gepard: a rapid and sensitive tool for creating dotplots on genome scale

被引：542
作者：
Krumsiek, Jan
Arnold, Roland
Rattei, Thomas
机构：
[1] GSF, Natl Res Ctr Environm & hlth, Inst Bioformat, MIPS, D-85764 Neuherberg, Germany
[2] Tech Univ Munich, Dept Genome Oriented Bioinformat, D-85354 Freising Weihenstephan, Germany
来源：
BIOINFORMATICS | 2007年 / 23卷 / 08期
关键词：
D O I：
10.1093/bioinformatics/btm039
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Gepard provides a user-friendly, interactive application for the quick creation of dotplots. It utilizes suffix arrays to reduce the time complexity of dotplot calculation to Theta(m*log n). A client-server mode, which is a novel feature for dotplot creation software, allows the user to calculate dotplots and color them by functional annotation without any prior downloading of sequence or annotation data.
引用
收藏
页码：1026 / 1028
页数：3
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