Structural and immunogenicity analysis of reconstructed ancestral and consensus P48/45 for cross-species anti malaria transmission-blocking vaccine

被引:1
作者
Ramanto, Kevin Nathanael [1 ]
Nurdiansyah, Rizky [1 ]
机构
[1] Indonesia Int Inst Life Sci, Sch Life Sci, Dept Bioinformat, Jakarta, Indonesia
关键词
Malaria; Vaccine development; 6-Cysteine protein family; Ancestral and consensus reconstruction; PREDICTION; EPITOPES;
D O I
10.1016/j.compbiolchem.2021.107495
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The development of the anti-malaria vaccine holds a promising future in malaria control. One of the anti-malaria vaccine strategies known as the transmission-blocking vaccine (TBV) is to inhibit the parasite transmission between humans and mosquitoes by targeting the parasite gametocyte. Previously, we found that P48/45 included in the 6-Cysteine protein family shared by Plasmodium sp. We also detected vaccine properties possessed by all human-infecting Plasmodium and could be used as a cross-species anti-malaria vaccine. In this study, we investigated the efficacy of P48/45 through the ancestral and consensus reconstruction approach. P48/45 phylogenetic and time tree analysis was done by RAXML and BEAST2. GRASP server and Ugene software were used to reconstruct ancestral and consensus sequences, respectively. The protein structural prediction was made by using a psipred and Rosetta program. Each protein characteristic of P48/45 was analyzed by assessing hydrophobicity and Post-Translational Modification sites. Meanwhile, the Epitope sequence for B-cell, T-cell, and HLA was determined using an immunoinformatics approach. Lastly, molecular docking simulation was done to determine native binding interactions of P48/45-P230. The result showed a distinct protein characteristic of ancestral and consensus sequences. The immunogenicity analysis revealed the number of epitopes in the ancestral sequence is greater than the consensus sequence. The study also found a conserved epitope located in the binding site and consists of specific Post-Translational Modification sites. Hence, our research provides detailed insight into ancestral and consensus P48/45 efficacy for the cross-species anti-malaria vaccine.
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页数:12
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共 55 条
[31]   PDBsum: Structural summaries of PDB entries [J].
Laskowski, Roman A. ;
Jablonska, Jagoda ;
Pravda, Lukas ;
Varekova, Radka Svobodova ;
Thornton, Janet M. .
PROTEIN SCIENCE, 2018, 27 (01) :129-134
[32]   Bioinformatic prediction of epitopes in the Emy162 antigen of Echinococcus multilocularis [J].
Li, Yanhua ;
Liu, Xianfei ;
Zhu, Yuejie ;
Zhou, Xiaotao ;
Cao, Chunbao ;
Hu, Xiaoan ;
Ma, Haimei ;
Wen, Hao ;
Ma, Xiumin ;
Ding, Jian-Bing .
EXPERIMENTAL AND THERAPEUTIC MEDICINE, 2013, 6 (02) :335-340
[33]   Structural and Computational Biology in the Design of Immunogenic Vaccine Antigens [J].
Liljeroos, Lassi ;
Malito, Enrico ;
Ferlenghi, Ilaria ;
Bottomley, Matthew James .
JOURNAL OF IMMUNOLOGY RESEARCH, 2015, 2015
[34]   CD4+T Cells: Differentiation and Functions [J].
Luckheeram, Rishi Vishal ;
Zhou, Rui ;
Verma, Asha Devi ;
Xia, Bing .
CLINICAL & DEVELOPMENTAL IMMUNOLOGY, 2012,
[35]   The Case for Exploiting Cross-Species Epitopes in Malaria Vaccine Design [J].
Mitran, Catherine J. ;
Yanow, Stephanie K. .
FRONTIERS IN IMMUNOLOGY, 2020, 11
[36]  
Nurdiansyah R., 2020, ACTA BIOCH INDONESIA, V2
[37]   Unipro UGENE: a unified bioinformatics toolkit [J].
Okonechnikov, Konstantin ;
Golosova, Olga ;
Fursov, Mikhail .
BIOINFORMATICS, 2012, 28 (08) :1166-1167
[38]   A New Malaria Agent in African Hominids [J].
Ollomo, Benjamin ;
Durand, Patrick ;
Prugnolle, Franck ;
Douzery, Emmanuel ;
Arnathau, Celine ;
Nkoghe, Dieudonne ;
Leroy, Eric ;
Renaud, Francoise .
PLOS PATHOGENS, 2009, 5 (05)
[39]   The Impact of Malaria Parasites on Dendritic Cell-T Cell Interaction [J].
Osii, Rowland S. ;
Otto, Thomas D. ;
Garside, Paul ;
Ndungu, Francis M. ;
Brewer, James M. .
FRONTIERS IN IMMUNOLOGY, 2020, 11
[40]   Expression of full-length Plasmodium falciparum P48/45 in P. berghei blood stages: A method to express and evaluate vaccine antigens [J].
Othman, Ahmad Syibli ;
Lin, Jing-wen ;
Franke-Fayard, Blandine M. ;
Kroeze, Hans ;
van Pul, Fiona J. A. ;
Chevalley-Maurel, Severine ;
Ramesar, Jai ;
Marin-Mogollon, Catherin ;
Jore, Matthijs M. ;
Morin, Merribeth J. ;
Long, Carole A. ;
Sauerwein, Robert ;
Birkett, Ashley ;
Miura, Kazutoyo ;
Janse, Chris J. ;
Khan, Shahid M. .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2018, 224 :44-49