Dissipative particle dynamics: dissipative forces from atomistic simulation

被引:6
|
作者
Sokhan, Vlad P. [1 ]
Todorov, Ilian T. [1 ]
机构
[1] STFC Daresbury Lab, Sci Tech Daresbury, Warrington, Cheshire, England
基金
英国工程与自然科学研究理事会;
关键词
Dissipative particle dynamics; molecular dynamics; coarse-graining; parameters estimation; DL_POLY; COARSE-GRAINED MODEL; SYSTEMS; FIELD; POTENTIALS; ALGORITHMS;
D O I
10.1080/08927022.2019.1578353
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present a novel approach of mapping dissipative particle dynamics (DPD) into classical molecular dynamics. By introducing the invariant volume element representing the swarm of atoms, we show that the interactions between the emerging Brownian quasiparticles arise naturally from its geometric definition and include both conservative repulsion and dissipative drag forces. The quasiparticles, which are composed of atomistic host solvent rather than being simply immersed in it, provide a link between the atomistic and DPD levels and a practical route to extract the DPD parameters as direct statistical averages over the atomistic host system. The method thus provides the molecular foundations for the mesoscopic DPD. It is illustrated on the example of simple monatomic supercritical fluid demonstrating good agreement in thermodynamic and transport properties calculated for the atomistic system and DPD using the obtained parameters.
引用
收藏
页码:248 / 256
页数:9
相关论文
共 50 条
  • [1] The role of the dissipative and random forces in the calculation of the pressure of simple fluids with dissipative particle dynamics
    Gama Goicochea, A.
    Balderas Altamirano, M. A.
    Hernandez, J. D.
    Perez, E.
    COMPUTER PHYSICS COMMUNICATIONS, 2015, 188 : 76 - 81
  • [2] Simulation of suspensions in constricted geometries by dissipative particle dynamics
    Darias, JR
    Quiroga, M
    Medina, E
    Colmenares, PJ
    Paredes, VR
    MOLECULAR SIMULATION, 2003, 29 (6-7) : 443 - 449
  • [3] Dissipative particle dynamics simulation of a gold nanoparticle system
    Juan, SCC
    Hua, CY
    Chen, CL
    Sun, XQ
    Xi, HT
    MOLECULAR SIMULATION, 2005, 31 (04) : 277 - 282
  • [4] A note on hydrodynamics from dissipative particle dynamics
    Bian, X.
    Li, Z.
    Adams, N. A.
    APPLIED MATHEMATICS AND MECHANICS-ENGLISH EDITION, 2018, 39 (01) : 63 - 82
  • [5] Dissipative Particle Dynamics Simulation of Association Reaction in Telechelic Polymers
    Li Hui
    Zhang Jing
    Liu Hong
    Sun Chia-Chung
    CHEMICAL JOURNAL OF CHINESE UNIVERSITIES-CHINESE, 2011, 32 (10): : 2410 - 2414
  • [6] Translocation of polymer through nanopore: dissipative particle dynamics simulation
    Luo, Meng-Bo
    CHINESE SCIENCE BULLETIN, 2014, 59 (35): : 4960 - 4967
  • [7] Multiscale modeling with smoothed dissipative particle dynamics
    Kulkarni, Pandurang M.
    Fu, Chia-Chun
    Shell, M. Scott
    Leal, L. Gary
    JOURNAL OF CHEMICAL PHYSICS, 2013, 138 (23)
  • [8] Dissipative Particle Dynamics
    Pivkin, Igor V.
    Caswell, Bruce
    Karniadakis, George Em
    REVIEWS IN COMPUTATIONAL CHEMISTRY, VOL 27, 2011, 27 : 85 - 110
  • [9] Adaptive resolution simulations coupling atomistic water to dissipative particle dynamics
    Zavadlav, Julija
    Praprotnik, Matej
    JOURNAL OF CHEMICAL PHYSICS, 2017, 147 (11)
  • [10] Effective boundary forces for several geometries in dissipative particle dynamics
    Colmenares, PJ
    Rousse, R
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2006, 367 : 93 - 105