Conversion of OprO into an OprP-like Channel by Exchanging Key Residues in the Channel Constriction

被引:9
作者
Ganguly, Sonalli [1 ]
Kesireddy, Anusha [2 ]
Barcena-Uribarri, Ivan [1 ]
Kleinekathoefer, Ulrich [2 ]
Benz, Roland [1 ]
机构
[1] Jacobs Univ Bremen, Dept Life Sci & Chem, Bremen, Germany
[2] Jacobs Univ Bremen, Dept Phys & Earth Sci, Bremen, Germany
关键词
MOLECULAR-DYNAMICS METHOD; ADDITIVE FORCE-FIELD; OUTER-MEMBRANE; PSEUDOMONAS-AERUGINOSA; ESCHERICHIA-COLI; ANION TRANSPORT; SIMULATIONS; PORIN; PHOSPHATE; PERMEABILITY;
D O I
10.1016/j.bpj.2017.07.004
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Under phosphate-limiting conditions, the channels OprP and OprO are induced and expressed in the outer membrane of Pseudomonas aeruginosa. Despite their large homology, the phosphate:specific OprP and the diphosphate-specific OprO pores show structural differences in their binding sites situated in the constriction region. Previously, it was shown that the mutation of amino acids in OprP (Y62F and Y114D) led to an exchange in substrate specificity similar to OprO. To support the role of these key amino acids in the substrate sorting of these specific channels, the reverse mutants for OprO (F62Y, D114Y, and F62Y/D114Y) were created in this study. The phosphate and diphosphate binding of the generated channels was studied in planar lipid bilayers. Our results show that mutations of key residues indeed reverse the substrate specificity of OprO to OprP and support the view that just a few strategically positioned amino acids are mainly responsible for its substrate specificity.
引用
收藏
页码:829 / 834
页数:6
相关论文
共 31 条
[1]   Imaging α-hemolysin with molecular dynamics:: Ionic conductance, osmotic permeability, and the electrostatic potential map [J].
Aksimentiev, A ;
Schulten, K .
BIOPHYSICAL JOURNAL, 2005, 88 (06) :3745-3761
[2]   ANION TRANSPORT THROUGH THE PHOSPHATE-SPECIFIC OPRP-CHANNEL OF THE PSEUDOMONAS-AERUGINOSA OUTER-MEMBRANE - EFFECTS OF PHOSPHATE, DI-BASIC AND TRIBASIC ANIONS AND OF NEGATIVELY-CHARGED LIPIDS [J].
BENZ, R ;
EGLI, C ;
HANCOCK, REW .
BIOCHIMICA ET BIOPHYSICA ACTA, 1993, 1149 (02) :224-230
[3]   IONIC SELECTIVITY OF PORES FORMED BY THE MATRIX PROTEIN (PORIN) OF ESCHERICHIA-COLI [J].
BENZ, R ;
JANKO, K ;
LAUGER, P .
BIOCHIMICA ET BIOPHYSICA ACTA, 1979, 551 (02) :238-247
[4]   MECHANISM OF SUGAR-TRANSPORT THROUGH THE SUGAR-SPECIFIC LAMB CHANNEL OF ESCHERICHIA-COLI OUTER-MEMBRANE [J].
BENZ, R ;
SCHMID, A ;
VOSCHEPERKEUTER, GH .
JOURNAL OF MEMBRANE BIOLOGY, 1987, 100 (01) :21-29
[5]  
Benz R., 2004, BACTERIAL EUKARYOTIC
[6]   Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone φ, ψ and Side-Chain χ1 and χ2 Dihedral Angles [J].
Best, Robert B. ;
Zhu, Xiao ;
Shim, Jihyun ;
Lopes, Pedro E. M. ;
Mittal, Jeetain ;
Feig, Michael ;
MacKerell, Alexander D., Jr. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (09) :3257-3273
[7]   Molecular mechanisms of antibiotic resistance [J].
Blair, Jessica M. A. ;
Webber, Mark A. ;
Baylay, Alison J. ;
Ogbolu, David O. ;
Piddock, Laura J. V. .
NATURE REVIEWS MICROBIOLOGY, 2015, 13 (01) :42-51
[8]   Constant electric field simulations of the membrane potential illustrated with simple systems [J].
Gumbart, James ;
Khalili-Araghi, Fatemeh ;
Sotomayor, Marcos ;
Roux, Benoit .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2012, 1818 (02) :294-302
[9]   Function of Pseudomonas porins in uptake and efflux [J].
Hancock, REW ;
Brinkman, FSL .
ANNUAL REVIEW OF MICROBIOLOGY, 2002, 56 :17-38
[10]  
Hess B, 1997, J COMPUT CHEM, V18, P1463, DOI 10.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO