Averaged Solvent Embedding Potential Parameters for Multiscale Modeling of Molecular Properties

被引:42
作者
Beerepoot, Maarten T. P. [1 ]
Steindal, Arnfinn Hykkerud [1 ]
List, Nanna Holmgaard [2 ]
Kongsted, Jacob [2 ]
Olsen, Jogvan Magnus Haugaard [2 ,3 ]
机构
[1] Univ Tromso, Arctic Univ Norway, Dept Chem, Ctr Theoret & Computat Chem, N-9037 Tromso, Norway
[2] Univ Southern Denmark, Dept Phys Chem & Pharm, DK-5230 Odense M, Denmark
[3] Ecole Polytech Fed Lausanne, Lab Computat Chem & Biochem, CH-1015 Lausanne, Switzerland
基金
欧洲研究理事会;
关键词
ATOMIC CHARGES; FORCE-FIELD; ENERGY; ACCURACY; PROGRAM; LOPROP;
D O I
10.1021/acs.jctc.5b01000
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We derive and validate averaged solvent parameters for embedding potentials to be used in polarizable embedding quantum mechanics/molecular mechanics (QM/MM) molecular property calculations of solutes in organic solvents. The parameters are solvent-specific atom-centered partial charges and isotropic polarizabilities averaged over a large number of geometries of solvent molecules. The use of averaged parameters reduces the computational cost to obtain the embedding potential, which can otherwise be a rate-limiting step in calculations involving large environments. The parameters are evaluated by analyzing the quality of the resulting molecular electrostatic potentials with respect to full QM potentials. We show that a combination of geometry-specific parameters for solvent molecules close to the QM region and averaged parameters for solvent molecules further away allows for efficient polarizable embedding multiscale modeling without compromising the accuracy. The results are promising for the development of general embedding parameters for biomolecules, where the reduction in computational cost can be considerable.
引用
收藏
页码:1684 / 1695
页数:12
相关论文
共 46 条
[1]   The Dalton quantum chemistry program system [J].
Aidas, Kestutis ;
Angeli, Celestino ;
Bak, Keld L. ;
Bakken, Vebjorn ;
Bast, Radovan ;
Boman, Linus ;
Christiansen, Ove ;
Cimiraglia, Renzo ;
Coriani, Sonia ;
Dahle, Pal ;
Dalskov, Erik K. ;
Ekstrom, Ulf ;
Enevoldsen, Thomas ;
Eriksen, Janus J. ;
Ettenhuber, Patrick ;
Fernandez, Berta ;
Ferrighi, Lara ;
Fliegl, Heike ;
Frediani, Luca ;
Hald, Kasper ;
Halkier, Asger ;
Hattig, Christof ;
Heiberg, Hanne ;
Helgaker, Trygve ;
Hennum, Alf Christian ;
Hettema, Hinne ;
Hjertenaes, Eirik ;
Host, Stinne ;
Hoyvik, Ida-Marie ;
Iozzi, Maria Francesca ;
Jansik, Branislav ;
Jensen, Hans Jorgen Aa. ;
Jonsson, Dan ;
Jorgensen, Poul ;
Kauczor, Joanna ;
Kirpekar, Sheela ;
Kjrgaard, Thomas ;
Klopper, Wim ;
Knecht, Stefan ;
Kobayashi, Rika ;
Koch, Henrik ;
Kongsted, Jacob ;
Krapp, Andreas ;
Kristensen, Kasper ;
Ligabue, Andrea ;
Lutnaes, Ola B. ;
Melo, Juan I. ;
Mikkelsen, Kurt V. ;
Myhre, Rolf H. ;
Neiss, Christian .
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2014, 4 (03) :269-284
[2]  
[Anonymous], PELIB POLARIZABLE EM
[3]   Software News and Update MOLCAS 7: The Next Generation [J].
Aquilante, Francesco ;
De Vico, Luca ;
Ferre, Nicolas ;
Ghigo, Giovanni ;
Malmqvist, Per-Ake ;
Neogrady, Pavel ;
Pedersen, Thomas Bondo ;
Pitonak, Michal ;
Reiher, Markus ;
Roos, Bjorn O. ;
Serrano-Andres, Luis ;
Urban, Miroslav ;
Veryazov, Valera ;
Lindh, Roland .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2010, 31 (01) :224-247
[4]   ATOMS IN MOLECULES [J].
BADER, RFW .
ACCOUNTS OF CHEMICAL RESEARCH, 1985, 18 (01) :9-15
[5]   A WELL-BEHAVED ELECTROSTATIC POTENTIAL BASED METHOD USING CHARGE RESTRAINTS FOR DERIVING ATOMIC CHARGES - THE RESP MODEL [J].
BAYLY, CI ;
CIEPLAK, P ;
CORNELL, WD ;
KOLLMAN, PA .
JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (40) :10269-10280
[6]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[7]   Convergence of environment polarization effects in multiscale modeling of excitation energies [J].
Beerepoot, Maarten T. P. ;
Steindal, Arnfinn Hykkerud ;
Ruud, Kenneth ;
Olsen, Jogvan Magnus Haugaard ;
Kongsted, Jacob .
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2014, 1040 :304-311
[8]   ATOMIC CHARGES DERIVED FROM SEMIEMPIRICAL METHODS [J].
BESLER, BH ;
MERZ, KM ;
KOLLMAN, PA .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1990, 11 (04) :431-439
[9]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[10]  
Case D.A., 2010, AMBER 11