Long noncoding RNA: multiple players in gene expression

被引:71
作者
Chen, Xiaochang [1 ]
Sun, Yunmei [1 ]
Cai, Rui [1 ]
Wang, Guoqiang [1 ]
Shu, Xiaoyan [2 ]
Pang, Weijun [1 ]
机构
[1] Northwest A&F Univ, Coll Anim Sci & Technol, Lab Anim Fat Deposit & Muscle Dev, Yangling 712100, Shaanxi, Peoples R China
[2] Southwest Univ Sci & Technol, Sch Life Sci & Engn, Mianyang 621010, Sichuan, Peoples R China
关键词
Disease; Epigenetics; LncRNAs; Post-transcription; Transcription; MESSENGER-RNA; GENOME-WIDE; TRANSCRIPTIONAL INTERFERENCE; CELL-DIFFERENTIATION; CANCER METASTASIS; PROSTATE-CANCER; BREAST-CANCER; DARK-MATTER; LNCRNA; CHROMATIN;
D O I
10.5483/BMBRep.2018.51.6.025
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Previously considered as a component of transcriptional noise, long noncoding RNAs (lncRNAs) were neglected as a therapeutic target, however, recently increasing evidence has shown that lncRNAs can participate in numerous biological processes involved in genetic regulation including epigenetic, transcriptional, and post-transcriptional regulation. In this review, we discuss the fundamental functions of lncRNAs at different regulatory levels and their roles in metabolic balance. Typical examples are introduced to illustrate their diverse molecular mechanisms. The comprehensive investigation and identification of key lncRNAs will not only contribute to insights into diseases, such as breast cancer and type II diabetes, but also provide promising therapeutic targets for related diseases.
引用
收藏
页码:280 / 289
页数:10
相关论文
共 92 条
[1]   De Novo Reconstruction of Adipose Tissue Transcriptomes Reveals Long Non-coding RNA Regulators of Brown Adipocyte Development [J].
Alvarez-Dominguez, Juan R. ;
Bai, Zhiqiang ;
Xu, Dan ;
Yuan, Bingbing ;
Lo, Kinyui Alice ;
Yoon, Myeong Jin ;
Lim, Yen Ching ;
Knoll, Marko ;
Slavov, Nikolai ;
Chen, Shuai ;
Chen, Peng ;
Lodish, Harvey F. ;
Sun, Lei .
CELL METABOLISM, 2015, 21 (05) :764-776
[2]   A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance [J].
Anderson, Douglas M. ;
Anderson, Kelly M. ;
Chang, Chi-Lun ;
Makarewich, Catherine A. ;
Nelson, Benjamin R. ;
McAnally, John R. ;
Kasaragod, Prasad ;
Shelton, John M. ;
Liou, Jen ;
Bassel-Duby, Rhonda ;
Olson, Eric N. .
CELL, 2015, 160 (04) :595-606
[3]   Long noncoding RNAs are rarely translated in two human cell lines [J].
Banfai, Balazs ;
Jia, Hui ;
Khatun, Jainab ;
Wood, Emily ;
Risk, Brian ;
Gundling, William E., Jr. ;
Kundaje, Anshul ;
Gunawardena, Harsha P. ;
Yu, Yanbao ;
Xie, Ling ;
Krajewski, Krzysztof ;
Strahl, Brian D. ;
Chen, Xian ;
Bickel, Peter ;
Giddings, Morgan C. ;
Brown, James B. ;
Lipovich, Leonard .
GENOME RESEARCH, 2012, 22 (09) :1646-1657
[4]   MicroRNAs: Target Recognition and Regulatory Functions [J].
Bartel, David P. .
CELL, 2009, 136 (02) :215-233
[5]   Long Noncoding RNAs: Cellular Address Codes in Development and Disease [J].
Batista, Pedro J. ;
Chang, Howard Y. .
CELL, 2013, 152 (06) :1298-1307
[6]   Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation [J].
Bazzini, Ariel A. ;
Johnstone, Timothy G. ;
Christiano, Romain ;
Mackowiak, Sebastian D. ;
Obermayer, Benedikt ;
Fleming, Elizabeth S. ;
Vejnar, Charles E. ;
Lee, Miler T. ;
Rajewsky, Nikolaus ;
Walther, Tobias C. ;
Giraldez, Antonio J. .
EMBO JOURNAL, 2014, 33 (09) :981-993
[7]   Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses [J].
Cabili, Moran N. ;
Trapnell, Cole ;
Goff, Loyal ;
Koziol, Magdalena ;
Tazon-Vega, Barbara ;
Regev, Aviv ;
Rinn, John L. .
GENES & DEVELOPMENT, 2011, 25 (18) :1915-1927
[8]   Epigenetic and lncRNA regulation of cardiac pathophysiology [J].
Chang, Ching-Pin ;
Han, Pei .
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH, 2016, 1863 (07) :1767-1771
[9]   Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs [J].
Chew, Guo-Liang ;
Pauli, Andrea ;
Rinn, John L. ;
Regev, Aviv ;
Schier, Alexander F. ;
Valen, Eivind .
DEVELOPMENT, 2013, 140 (13) :2828-2834
[10]   Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions [J].
Chu, Ci ;
Qu, Kun ;
Zhong, Franklin L. ;
Artandi, Steven E. ;
Chang, Howard Y. .
MOLECULAR CELL, 2011, 44 (04) :667-678