Relevance of G-quadruplex structures to pharmacogenetics

被引:27
作者
Cree, Simone L. [1 ]
Kennedy, Martin A. [1 ]
机构
[1] Univ Otago, Carney Ctr Pharmacogen, Dept Pathol, Christchurch, New Zealand
关键词
drug targets; G-quadruplex (G4); gene expression; gene regulation; secondary structure; RNA G-QUADRUPLEX; MESSENGER-RNA; C-MYC; SMALL-MOLECULE; GENE-EXPRESSION; TRANSLATION INITIATION; G-QUARTET; DNA; PROMOTER; METABOLISM;
D O I
10.3389/fphar.2014.00160
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
G-quadruplexes are non-canonical secondary structures formed within nucleic acids that are involved in modulating cellular processes such as replication, gene regulation, recombination and epigenetics. Within genes, there is mounting evidence of G-quadruplex involvement in transcriptional and post transcriptional regulation. We report the presence of potential G-quadruplex motifs within relevant sites of some important pharmacogenes and discuss the possible implications of this on the function and expression of these genes. Appreciating the location and potential functions of these motifs may be of value when considering the impacts of some pharmacogenetic variants. G-quadruplexes are also the focus of drug development efforts in oncology and we highlight the broader pharmacological implications of treatment strategies that may target G-quadruplexes.
引用
收藏
页数:8
相关论文
共 84 条
[11]  
Biffi G, 2013, NAT CHEM, V5, P182, DOI [10.1038/nchem.1548, 10.1038/NCHEM.1548]
[12]   A single internal ribosome entry site containing a G quartet RNA structure drives fibroblast growth factor 2 gene expression at four alternative translation initiation codons [J].
Bonnal, S ;
Schaeffer, C ;
Créancier, L ;
Clamens, S ;
Moine, H ;
Prats, AC ;
Vagner, S .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (41) :39330-39336
[13]   A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes [J].
Bugaut, Anthony ;
Balasubramanian, Shankar .
BIOCHEMISTRY, 2008, 47 (02) :689-697
[14]   5′-UTR RNA G-quadruplexes: translation regulation and targeting [J].
Bugaut, Anthony ;
Balasubramanian, Shankar .
NUCLEIC ACIDS RESEARCH, 2012, 40 (11) :4727-4741
[15]   Small molecule-mediated inhibition of translation by targeting a native RNA G-quadruplex [J].
Bugaut, Anthony ;
Rodriguez, Raphael ;
Kumari, Sunita ;
Hsu, Shang-Te Danny ;
Balasubramanian, Shankar .
ORGANIC & BIOMOLECULAR CHEMISTRY, 2010, 8 (12) :2771-2776
[16]   Quadruplex DNA: sequence, topology and structure [J].
Burge, Sarah ;
Parkinson, Gary N. ;
Hazel, Pascale ;
Todd, Alan K. ;
Neidle, Stephen .
NUCLEIC ACIDS RESEARCH, 2006, 34 (19) :5402-5415
[17]   FDA-approved Drugs Selected Using Virtual Screening Bind Specifically to G-quadruplex DNA [J].
Castillo-Gonzalez, Daimel ;
Perez-Machado, Gisselle ;
Guedin, Aurore ;
Mergny, Jean-Louis ;
Cabrera-Perez, Miguel-Angel .
CURRENT PHARMACEUTICAL DESIGN, 2013, 19 (12) :2164-2173
[18]   MAZ-binding G4-decoy with locked nucleic acid and twisted intercalating nucleic acid modifications suppresses KRAS in pancreatic cancer cells and delays tumor growth in mice [J].
Cogoi, Susanna ;
Zorzet, Sonia ;
Rapozzi, Valentina ;
Geci, Imrich ;
Pedersen, Erik B. ;
Xodo, Luigi E. .
NUCLEIC ACIDS RESEARCH, 2013, 41 (07) :4049-4064
[19]  
Daly AK, 2012, ADV PHARMACOL, V63, P137, DOI 10.1016/B978-0-12-398339-8.00004-5
[20]   Selective RNA Versus DNA G-Quadruplex Targeting by In Situ Click Chemistry [J].
Di Antonio, Marco ;
Biffi, Giulia ;
Mariani, Angelica ;
Raiber, Eun-Ang ;
Rodriguez, Raphael ;
Balasubramanian, Shankar .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2012, 51 (44) :11073-11078