Magnetic resonance tensors in Uracil: Calculation of 13C, 15N, 17O NMR chemical shifts, 17O and 14N electric field gradients and measurement of 13C and 15N chemical shifts

被引:15
作者
Amini, Saeed K. [2 ]
Shaghaghi, Hoora [2 ]
Bain, Alex D. [1 ]
Chabok, Ammar [2 ]
Tafazzoli, Mohsen [2 ]
机构
[1] McMaster Univ, Dept Chem, Hamilton, ON L8S 4M1, Canada
[2] Sharif Univ Technol, Dept Chem, Tehran, Iran
基金
加拿大自然科学与工程研究理事会;
关键词
NUCLEIC-ACID BASES; SOLID-STATE NMR; MECHANICAL FORCE-FIELDS; CENTER-DOT-O; VIBRATIONAL-SPECTRA; SHIELDING SCALE; HYDROGEN-BOND; PYRIMIDINE-DERIVATIVES; STRUCTURAL INFORMATION; HETEROCYCLIC-COMPOUNDS;
D O I
10.1016/j.ssnmr.2009.12.001
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The experimental C-13 NMR chemical shift components of uracil in the solid state are reported for the first time (to our knowledge), as well as newer data for the N-15 nuclei. These experimental values are supported by extensive calculated data of the C-13, N-15 and O-17 chemical shielding and O-17 and N-14 electric field gradient (EFG) tensors. In the crystal, uracil forms a number of strong and weak hydrogen bonds, and the effect of these on the C-13 and N-15 chemical shift tensors is studied. This powerful combination of the structural methods and theoretical calculations gives a very detailed view of the strong and weak hydrogen bond formation by this molecule. Good calculated results for the optimized cluster in most cases (except for the EFG values of the (14)N3 and (17)O4 nuclei) certify the accuracy of our optimized coordinates for the hydrogen nuclei. Our reported RMSD values for the calculated chemical shielding and EFG tensors are smaller than those reported previously. In the optimized cluster the 6-311+G** basis set is the optimal one in the chemical shielding and EFG calculations, except for the EFG calculations of the oxygen nuclei, in which the 6-31+G** basis set is the optimal one. The optimal method for the chemical shielding and EFG calculations of the oxygen and nitrogen nuclei is the PW91PW91 method, while for the chemical shielding calculations of the C-13 nuclei the B3LYP method gives the best results. (C) 2009 Elsevier Inc. All rights reserved.
引用
收藏
页码:13 / 20
页数:8
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