MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins

被引:142
作者
Necci, Marco [1 ,2 ]
Piovesan, Damiano [1 ]
Dosztanyi, Zsuzsanna [3 ,4 ]
Tosatto, Silvio C. E. [1 ,5 ]
机构
[1] Univ Padua, Dept Biomed Sci, I-35121 Padua, Italy
[2] Fdn Edmund Mach, I-38010 San Michele All Adige, Italy
[3] Eotvos Lorand Univ, Dept Biochem, MTA ELTE Lendulet Bioinformat Res Grp, Budapest, Hungary
[4] Hungarian Acad Sci, Res Ctr Nat Sci, Inst Enzymol, H-1518 Budapest, Hungary
[5] CNR, Inst Neurosci, I-35121 Padua, Italy
基金
匈牙利科学研究基金会;
关键词
COMPREHENSIVE DATABASE; FAMILIES;
D O I
10.1093/bioinformatics/btx015
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: Intrinsic disorder (ID) is established as an important feature of protein sequences. Its use in proteome annotation is however hampered by the availability of many methods with similar performance at the single residue level, which have mostly not been optimized to predict long ID regions of size comparable to domains. Results: Here, we have focused on providing a single consensus-based prediction, MobiDB-lite, optimized for highly specific (i.e. few false positive) predictions of long disorder. The method uses eight different predictors to derive a consensus which is then filtered for spurious short predictions. Consensus prediction is shown to outperform the single methods when annotating long ID regions. MobiDB-lite can be useful in large-scale annotation scenarios and has indeed already been integrated in the MobiDB, DisProt and InterPro databases.
引用
收藏
页码:1402 / 1404
页数:3
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