Detection of copy number variation for chromosomal sliding windows using high throughput sequencing data in the R environment

被引：0
|
作者：
Knaus, B. J. [1 ]
Grunwald, N. J. [2 ]
机构：
[1] USDA ARS, Hort Crops Res Unit, Corvallis, OR USA
[2] USDA ARS, Corvallis, OR USA
来源：
PHYTOPATHOLOGY | 2018年 / 108卷 / 10期
关键词：
D O I：
暂无
中图分类号：
Q94 [植物学];
学科分类号：
071001 ;
摘要：
引用
收藏
页码：108 / 108
页数：1
相关论文
共 50 条
  • [31] Exome sequencing and whole genome sequencing for the detection of copy number variation
    Hehir-Kwa, Jayne Y.
    Pfundt, Rolph
    Veltman, Joris A.
    EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2015, 15 (08) : 1023 - 1032
  • [32] reconCNV: interactive visualization of copy number data from high-throughput sequencing
    Chandramohan, Raghu
    Kakkar, Nipun
    Roy, Angshumoy
    Parsons, D. Williams
    BIOINFORMATICS, 2021, 37 (08) : 1164 - 1167
  • [33] Traditional karyotyping vs copy number variation sequencing for detection of chromosomal abnormalities associated with spontaneous miscarriage
    Liu, S.
    Song, L.
    Cram, D. S.
    Xiong, L.
    Wang, K.
    Wu, R.
    Liu, J.
    Deng, K.
    Jia, B.
    Zhong, M.
    Yang, F.
    ULTRASOUND IN OBSTETRICS & GYNECOLOGY, 2015, 46 (04) : 472 - 477
  • [34] Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion
    Xi, Ruibin
    Hadjipanayis, Angela G.
    Luquette, Lovelace J.
    Kim, Tae-Min
    Lee, Eunjung
    Zhang, Jianhua
    Johnson, Mark D.
    Muzny, Donna M.
    Wheeler, David A.
    Gibbs, Richard A.
    Kucherlapati, Raju
    Park, Peter J.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (46) : E1128 - E1136
  • [35] Copy number variation detection using next generation sequencing read counts
    Heng Wang
    Dan Nettleton
    Kai Ying
    BMC Bioinformatics, 15
  • [36] CoNVEX: copy number variation estimation in exome sequencing data using HMM
    Kaushalya C Amarasinghe
    Jason Li
    Saman K Halgamuge
    BMC Bioinformatics, 14
  • [37] Copy number variation detection using next generation sequencing read counts
    Wang, Heng
    Nettleton, Dan
    Ying, Kai
    BMC BIOINFORMATICS, 2014, 15
  • [38] CoNVEX: copy number variation estimation in exome sequencing data using HMM
    Amarasinghe, Kaushalya C.
    Li, Jason
    Halgamuge, Saman K.
    BMC BIOINFORMATICS, 2013, 14
  • [39] Accurate and reliable high-throughput detection of copy number variation in the human genome
    Fiegler, Heike
    Redon, Richard
    Andrews, Dan
    Scott, Carol
    Andrews, Robert
    Carder, Carol
    Clark, Richard
    Dovey, Oliver
    Ellis, Peter
    Feuk, Lars
    French, Lisa
    Hunt, Paul
    Kalaitzopoulos, Dimitrios
    Larkin, James
    Montgomery, Lyndal
    Perry, George H.
    Plumb, Bob W.
    Porter, Keith
    Rigby, Rachel E.
    Rigler, Diane
    Valsesia, Armand
    Langford, Cordelia
    Humphray, Sean J.
    Scherer, Stephen W.
    Lee, Charles
    Hurles, Matthew E.
    Carter, Nigel P.
    GENOME RESEARCH, 2006, 16 (12) : 1566 - 1574
  • [40] MONTAGE: a new tool for high-throughput detection of mosaic copy number variation
    Glessner, Joseph T.
    Chang, Xiao
    Liu, Yichuan
    Li, Jin
    Khan, Munir
    Wei, Zhi
    Sleiman, Patrick M. A.
    Hakonarson, Hakon
    BMC GENOMICS, 2021, 22 (01)
12345