URec:: a system for unrooted reconciliation

被引：23

作者：

Gorecki, Pawel ^{[1
]}

Tiuryn, Jerzy

机构：

[1] Univ Warsaw, Inst Informat, PL-02678 Warsaw, Poland

[2] Max Planck Inst Mol Genet, D-14195 Berlin, Germany

来源：

BIOINFORMATICS | 2007年 / 23卷 / 04期

关键词：

D O I：

10.1093/bioinformatics/btl634

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

URec is a software based on a concept of unrooted reconciliation. It can be used to reconcile a set of unrooted gene trees with a rooted species tree or a set of rooted species trees. Moreover, it computes detailed distribution of gene duplications and gene losses in a species tree. It can be used to infer optimal species phylogenies for a given set of gene trees. URec is implemented in C++ and can be easily compiled under Unix and Windows systems.

引用

页码：511 / 512

页数：2

共 10 条

[1]

Bonizzoni P, 2003, LECT NOTES COMPUT SC, V2653, P120

[2]

Chen K., 2000, RECOMB 2000. Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, P96, DOI 10.1145/332306.332351

[3] FITTING THE GENE LINEAGE INTO ITS SPECIES LINEAGE, A PARSIMONY STRATEGY ILLUSTRATED BY CLADOGRAMS CONSTRUCTED FROM GLOBIN SEQUENCES [J].