PARIS and SPARTA: Finding the Achilles' Heel of SARS-CoV-2

被引:23
作者
Simon, Viviana [1 ,2 ,3 ,19 ,20 ]
Kota, Vamsi [10 ]
Bloomquist, Ryan F. [11 ]
Hanley, Hannah B. [4 ]
Forgacs, David [4 ]
Pahwa, Savita [12 ]
Pallikkuth, Suresh [12 ]
Miller, Loren G. [6 ,7 ]
Schaenman, Joanna [6 ]
Yeaman, Michael R. [6 ,7 ]
Manthei, David [16 ]
Wolf, Joshua [18 ]
Gaur, Aditya H. [18 ]
Estepp, Jeremie H. [18 ]
Srivastava, Komal [1 ]
Carreno, Juan Manuel [1 ]
Cuevas, Frans [1 ]
Ellebedy, Ali H. [13 ,14 ,15 ]
Gordon, Aubree [16 ]
Valdez, Riccardo [21 ]
Cobey, Sarah [17 ]
Reed, Elaine F. [8 ]
Kolhe, Ravindra [9 ,10 ,11 ]
Thomas, Paul G. [18 ]
Schultz-Cherry, Stacey [18 ]
Ross, Ted M. [4 ,5 ]
Krammer, Florian [1 ,19 ,20 ]
机构
[1] Icahn Sch Med Mt Sinai, Dept Microbiol, New York, NY 10029 USA
[2] Icahn Sch Med Mt Sinai, Dept Med, Div Infect Dis, New York, NY USA
[3] Icahn Sch Med Mt Sinai, Global Hlth & Emerging Pathogens Inst, New York, NY USA
[4] Univ Georgia, Ctr Vaccine & Immunol, Athens, GA 30602 USA
[5] Univ Georgia, Dept Infect Dis, Athens, GA 30602 USA
[6] UCLA, Dept Med, David Geffen Sch Med, Los Angeles, CA USA
[7] Harbor UCLA Med Ctr, Lundquist Inst Biomed Innovat, Torrance, CA USA
[8] UCLA, Dept Pathol & Lab Med, David Geffen Sch Med, Los Angeles, CA USA
[9] Augusta Univ, Med Coll Georgia, Dept Pathol, Augusta, GA USA
[10] Augusta Univ, Med Coll Georgia, Dept Med, Augusta, GA USA
[11] Augusta Univ, Dent Coll Georgia, Dept Restorat Sci, Augusta, GA USA
[12] Univ Miami, Dept Microbiol & Immunol, Miller Sch Med, Miami, FL USA
[13] Washington Univ, Dept Pathol & Immunol, Sch Med, St Louis, MO USA
[14] Washington Univ, Andrew M & Jane M Bursky Ctr Human Immunol & Immu, Sch Med, St Louis, MO USA
[15] Washington Univ, Ctr Vaccines & Immun Microbial Pathogens, Sch Med, St Louis, MO USA
[16] Univ Michigan, Sch Publ Hlth, Dept Epidemiol, Ann Arbor, MI 48109 USA
[17] Univ Chicago, Dept Ecol & Evolut, 940 E 57Th St, Chicago, IL 60637 USA
[18] St Jude Childrens Res Hosp, Dept Infect Dis, Memphis, TN USA
[19] Icahn Sch Med Mt Sinai, Dept Pathol Mol & Cell Based Med, New York, NY 10029 USA
[20] Icahn Sch Med Mt Sinai, Ctr Vaccine Res & Pandem Preparedness C VARPP, New York, NY 10029 USA
[21] Univ Michigan, Dept Pathol, Ann Arbor, MI 48109 USA
基金
美国国家卫生研究院;
关键词
COVID-19; SARS-CoV-2; antibodies; cohort study; reinfection; REINFECTION; RESPONSES; INFLUENZA;
D O I
10.1128/msphere.00179-22
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
To understand reinfection rates and correlates of protection for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), we established eight different longitudinal cohorts in 2020 under the umbrella of the PARIS (Protection Associated with Rapid Immunity to SARS-CoV-2)/SPARTA (SARS SeroPrevalence And Respiratory Tract Assessment) studies. Here, we describe the PARIS/SPARTA cohorts, the harmonized assays and analysis that are performed across the cohorts, as well as case definitions for SARS-CoV-2 infection and reinfection that have been established by the team of PARIS/SPARTA investigators. IMPORTANCE Determining reinfection rates and correlates of protection against SARS-CoV-2 infection induced by both natural infection and vaccination is of high significance for the prevention and control of coronavirus disease 2019 (COVID-19). Furthermore, understanding reinfections or infection after vaccination and the role immune escape plays in these scenarios will inform the need for updates of the current SARS-CoV-2 vaccines and help update guidelines suitable for the postpandemic world. Determining reinfection rates and correlates of protection against SARS-CoV-2 infection induced by both natural infection and vaccination is of high significance for the prevention and control of coronavirus disease 2019 (COVID-19). Furthermore, understanding reinfections or infection after vaccination and the role immune escape plays in these scenarios will inform the need for updates of the current SARS-CoV-2 vaccines and help update guidelines suitable for the postpandemic world.
引用
收藏
页数:13
相关论文
共 61 条
[1]   Neutralizing Antibodies Correlate with Protection from SARS-CoV-2 in Humans during a Fishery Vessel Outbreak with a High Attack Rate [J].
Addetia, Amin ;
Crawford, Katharine H. D. ;
Dingens, Adam ;
Zhu, Haiying ;
Roychoudhury, Pavitra ;
Huang, Meei-Li ;
Jerome, Keith R. ;
Bloom, Jesse D. ;
Greninger, Alexander L. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2020, 58 (11)
[2]   Variable cellular responses to SARS-CoV-2 in fully vaccinated patients with multiple myeloma [J].
Aleman, Adolfo ;
Upadhyaya, Bhaskar ;
Tuballes, Kevin ;
Kappes, Katerina ;
Gleason, Charles R. ;
Beach, Katherine ;
Agte, Sarita ;
Srivastava, Komal ;
Van Oekelen, Oliver ;
Barcessat, Vanessa ;
Bhardwaj, Nina ;
Kim-Schulze, Seunghee ;
Gnjatic, Sacha ;
Brown, Brian ;
Cordon-Cardo, Carlos ;
Krammer, Florian ;
Merad, Miriam ;
Jagannath, Sundar ;
Wajnberg, Ania ;
Simon, Viviana ;
Parekh, Samir .
CANCER CELL, 2021, 39 (11) :1442-1444
[3]  
Amanat F, 2020, NAT MED, V26, P1033, DOI [10.1038/s41591-020-0913-5, 10.1101/2020.03.17.20037713]
[4]   Placental Pathology in Covid-19 Positive Mothers: Preliminary Findings [J].
Baergen, Rebecca N. ;
Heller, Debra S. .
PEDIATRIC AND DEVELOPMENTAL PATHOLOGY, 2020, 23 (03) :177-180
[5]   Activity of convalescent and vaccine serum against SARS-CoV-2 Omicron [J].
Carreno, Juan Manuel ;
Alshammary, Hala ;
Tcheou, Johnstone ;
Singh, Gagandeep ;
Raskin, Ariel J. ;
Kawabata, Hisaaki ;
Sominsky, Levy A. ;
Clark, Jordan J. ;
Adelsberg, Daniel C. ;
Bielak, Dominika A. ;
Gonzalez-Reiche, Ana Silvia ;
Dambrauskas, Nicholas ;
Vigdorovich, Vladimir ;
Srivastava, Komal ;
Sather, D. Noah ;
Sordillo, Emilia Mia ;
Bajic, Goran ;
van Bakel, Harm ;
Simon, Viviana ;
Krammer, Florian .
NATURE, 2022, 602 (7898) :682-+
[6]   Evidence for retained spike-binding and neutralizing activity against emerging SARS-CoV-2 variants in serum of COVID-19 mRNA vaccine recipients [J].
Carreno, Juan Manuel ;
Alshammary, Hala ;
Singh, Gagandeep ;
Raskin, Ariel ;
Amanat, Fatima ;
Amoako, Angela ;
Gonzalez-Reiche, Ana Silvia ;
van de Guchte, Adriana ;
Srivastava, Komal ;
Sordillo, Emilia Mia ;
Sather, D. Noah ;
van Bakel, Harm ;
Krammer, Florian ;
Simon, Viviana .
EBIOMEDICINE, 2021, 73
[7]   A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster [J].
Chan, Jasper Fuk-Woo ;
Yuan, Shuofeng ;
Kok, Kin-Hang ;
To, Kelvin Kai-Wang ;
Chu, Hin ;
Yang, Jin ;
Xing, Fanfan ;
Liu, Jieling ;
Yip, Cyril Chik-Yan ;
Poon, Rosana Wing-Shan ;
Tsoi, Hoi-Wah ;
Lo, Simon Kam-Fai ;
Chan, Kwok-Hung ;
Poon, Vincent Kwok-Man ;
Chan, Wan-Mui ;
Ip, Jonathan Daniel ;
Cai, Jian-Piao ;
Cheng, Vincent Chi-Chung ;
Chen, Honglin ;
Hui, Christopher Kim-Ming ;
Yuen, Kwok-Yung .
LANCET, 2020, 395 (10223) :514-523
[8]   SARS-CoV-2 infection protects against rechallenge in rhesus macaques [J].
Chandrashekar, Abishek ;
Liu, Jinyan ;
Martinot, Amanda J. ;
McMahan, Katherine ;
Mercado, Noe B. ;
Peter, Lauren ;
Tostanoski, Lisa H. ;
Yu, Jingyou ;
Maliga, Zoltan ;
Nekorchuk, Michael ;
Busman-Sahay, Kathleen ;
Terry, Margaret ;
Wrijil, Linda M. ;
Ducat, Sarah ;
Martinez, David R. ;
Atyeo, Caroline ;
Fischinger, Stephanie ;
Burke, John S. ;
Slein, Matthew D. ;
Pessaint, Laurent ;
Van Ry, Alex ;
Greenhouse, Jack ;
Taylor, Tammy ;
Blade, Kelvin ;
Cook, Anthony ;
Finneyfrock, Brad ;
Brown, Renita ;
Teow, Elyse ;
Velasco, Jason ;
Zahn, Roland ;
Wegmann, Frank ;
Abbink, Peter ;
Bondzie, Esther A. ;
Dagotto, Gabriel ;
Gebre, Makda S. ;
He, Xuan ;
Jacob-Dolan, Catherine ;
Kordana, Nicole ;
Li, Zhenfeng ;
Lifton, Michelle A. ;
Mahrokhian, Shant H. ;
Maxfield, Lori F. ;
Nityanandam, Ramya ;
Nkolola, Joseph P. ;
Schmidt, Aaron G. ;
Miller, Andrew D. ;
Baric, Ralph S. ;
Alter, Galit ;
Sorger, Peter K. ;
Estes, Jacob D. .
SCIENCE, 2020, 369 (6505) :812-+
[9]   Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection [J].
Dan, Jennifer M. ;
Mateus, Jose ;
Kato, Yu ;
Hastie, Kathryn M. ;
Yu, Esther Dawen ;
Faliti, Caterina E. ;
Grifoni, Alba ;
Ramirez, Sydney, I ;
Haupt, Sonya ;
Frazier, April ;
Nakao, Catherine ;
Rayaprolu, Vamseedhar ;
Rawlings, Stephen A. ;
Peters, Bjoern ;
Krammer, Florian ;
Simon, Viviana ;
Saphire, Erica Ollmann ;
Smith, Davey M. ;
Weiskopf, Daniela ;
Sette, Alessandro ;
Crotty, Shane .
SCIENCE, 2021, 371 (6529) :587-+
[10]   Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England [J].
Davies, Nicholas G. ;
Abbott, Sam ;
Barnard, Rosanna C. ;
Jarvis, Christopher, I ;
Kucharski, Adam J. ;
Munday, James D. ;
Pearson, Carl A. B. ;
Russell, Timothy W. ;
Tully, Damien C. ;
Washburne, Alex D. ;
Wenseleers, Tom ;
Gimma, Amy ;
Waites, William ;
Wong, Kerry L. M. ;
van Zandvoort, Kevin ;
Silverman, Justin D. ;
Diaz-Ordaz, Karla ;
Keogh, Ruth ;
Eggo, Rosalind M. ;
Funk, Sebastian ;
Jit, Mark ;
Atkins, Katherine E. ;
Edmunds, W. John .
SCIENCE, 2021, 372 (6538) :149-+