Patterns of transcription factor programs and immune pathway activation define four major subtypes of SCLC with distinct therapeutic vulnerabilities

被引:571
作者
Gay, Carl M. [1 ]
Stewart, C. Allison [1 ]
Park, Elizabeth M. [1 ]
Diao, Lixia [2 ]
Groves, Sarah M. [3 ]
Heeke, Simon [1 ]
Nabet, Barzin Y. [4 ]
Fujimoto, Junya [5 ]
Solis, Luisa M. [5 ]
Lu, Wei [5 ]
Xi, Yuanxin [2 ]
Cardnell, Robert J. [1 ]
Wang, Qi [2 ]
Fabbri, Giulia [6 ]
Cargill, Kasey R. [1 ]
Vokes, Natalie, I [1 ]
Ramkumar, Kavya [1 ]
Zhang, Bingnan [1 ]
Della Corte, Carminia M. [7 ]
Robson, Paul [8 ]
Swisher, Stephen G. [9 ]
Roth, Jack A. [9 ]
Glisson, Bonnie S. [1 ]
Shames, David S. [4 ]
Wistuba, Ignacio I. [5 ]
Wang, Jing [2 ]
Quaranta, Vito [3 ]
Minna, John [10 ]
Heymach, John, V [1 ]
Byers, Lauren Averett [1 ]
机构
[1] Univ Texas MD Anderson Canc Ctr, Dept Thorac Head & Neck Med Oncol, Houston, TX 77030 USA
[2] Univ Texas MD Anderson Canc Ctr, Dept Bioinformat & Computat Biol, Houston, TX 77030 USA
[3] Vanderbilt Univ, Dept Biochem, Med Ctr, Nashville, TN USA
[4] Genentech Inc, Dept Oncol Biomarker Dev, San Francisco, CA 94080 USA
[5] Univ Texas MD Anderson Canc Ctr, Dept Translat Mol Pathol, Houston, TX 77030 USA
[6] AstraZeneca, Waltham, MA USA
[7] Univ Campania Luigi Vanvitelli, Dept Precis Med, Oncol Div, Naples, Italy
[8] Jackson Lab Genom Med, Farmington, CT USA
[9] Univ Texas MD Anderson Canc Ctr, Dept Thorac & Cardiovasc Surg, Houston, TX 77030 USA
[10] Univ Texas Southwestern Med Ctr Dallas, Dept Internal Med & Simmons Canc Ctr, Dallas, TX 75390 USA
关键词
CELL LUNG-CANCER; ANTIBODY-DRUG CONJUGATE; LABETUZUMAB GOVITECAN; HETEROGENEITY; EXPRESSION; TUMORS; LINES; PEMBROLIZUMAB; INHIBITORS; CISPLATIN;
D O I
10.1016/j.ccell.2020.12.014
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Despite molecular and clinical heterogeneity, small cell lung cancer (SCLC) is treated as a single entity with predictably poor results. Using tumor expression data and non-negative matrix factorization, we identify four SCLC subtypes defined largely by differential expression of transcription factors ASCL1, NEUROD1, and POU2F3 or low expression of all three transcription factor signatures accompanied by an Inflamed gene signature (SCLC-A, N, P, and I, respectively). SCLC-I experiences the greatest benefit from the addition of immunotherapy to chemotherapy, while the other subtypes each have distinct vulnerabilities, including to inhibitors of PARP, Aurora kinases, or BCL-2. Cisplatin treatment of SCLC-A patient-derived xenografts induces intratumoral shifts toward SCLC-I, supporting subtype switching as amechanism of acquired platinum resistance. We propose that matching baseline tumor subtype to therapy, as well as manipulating subtype switching on therapy, may enhance depth and duration of response for SCLC patients.
引用
收藏
页码:346 / +
页数:22
相关论文
共 64 条
[1]   Nivolumab alone and nivolumab plus ipilimumab in recurrent small-cell lung cancer (CheckMate 032): a multicentre, open-label, phase 1/2 trial [J].
Antonia, Scott J. ;
Lopez-Martin, Jose A. ;
Bendell, Johanna ;
Ott, Patrick A. ;
Taylor, Matthew ;
Eder, Joseph Paul ;
Jaeger, Dirk ;
Pietanza, M. Catherine ;
Le, Dung T. ;
de Braud, Filippo ;
Morse, Michael A. ;
Ascierto, Paolo A. ;
Horn, Leora ;
Amin, Asim ;
Pillai, Rathi N. ;
Evans, Jeffry ;
Chau, Ian ;
Bono, Petri ;
Atmaca, Akin ;
Sharma, Padmanee ;
Harbison, Christopher T. ;
Lin, Chen-Sheng ;
Christensen, Olaf ;
Calvo, Emiliano .
LANCET ONCOLOGY, 2016, 17 (07) :883-895
[2]   IFN-γ-related mRNA profile predicts clinical response to PD-1 blockade [J].
Ayers, Mark ;
Lunceford, Jared ;
Nebozhyn, Michael ;
Murphy, Erin ;
Loboda, Andrey ;
Kaufman, David R. ;
Albright, Andrew ;
Cheng, Jonathan D. ;
Kang, S. Peter ;
Shankaran, Veena ;
Piha-Paul, Sarina A. ;
Yearley, Jennifer ;
Seiwert, Tanguy Y. ;
Ribas, Antoni ;
McClanahan, Terrill K. .
JOURNAL OF CLINICAL INVESTIGATION, 2017, 127 (08) :2930-2940
[3]   SCLC Subtypes Defined by ASCL1, NEUROD1, POU2F3, and YAP1: A Comprehensive Immunohistochemical and Histopathologic Characterization [J].
Baine, Marina K. ;
Hsieh, Min-Shu ;
Lai, W. Victoria ;
Egger, Jacklynn V. ;
Jungbluth, Achim A. ;
Daneshbod, Yahya ;
Beras, Amanda ;
Spencer, Rowanne ;
Lopardo, Jessica ;
Bodd, Francis ;
Montecalvo, Joseph ;
Sauter, Jennifer L. ;
Chang, Jason C. ;
Buonocore, Darren J. ;
Travis, William D. ;
Sen, Triparna ;
Poirier, John T. ;
Rudin, Charles M. ;
Rekhtman, Natasha .
JOURNAL OF THORACIC ONCOLOGY, 2020, 15 (12) :1823-1835
[4]  
Bl?ry M., 2013, J IMMUNOTHER CANCER, V1, pP41, DOI [10.1186/2051-1426-1-S1-P41, DOI 10.1186/2051-1426-1-S1-P41]
[5]   ASCL1 and NEUROD1 Reveal Heterogeneity in Pulmonary Neuroendocrine Tumors and Regulate Distinct Genetic Programs [J].
Borromeo, Mark D. ;
Savage, Trisha K. ;
Kollipara, Rahul K. ;
He, Min ;
Augustyn, Alexander ;
Osborne, Jihan K. ;
Girard, Luc ;
Minna, John D. ;
Gazdar, Adi F. ;
Cobb, Melanie H. ;
Johnson, Jane E. .
CELL REPORTS, 2016, 16 (05) :1259-1272
[6]   Tumor Heterogeneity Underlies Differential Cisplatin Sensitivity in Mouse Models of Small-Cell Lung Cancer [J].
Bottger, Franziska ;
Semenova, Ekaterina A. ;
Song, Ji-Ying ;
Ferone, Giustina ;
van der Vliet, Jan ;
Cozijnsen, Miranda ;
Bhaskaran, Rajith ;
Bombardelli, Lorenzo ;
Piersma, Sander R. ;
Pham, Thang, V ;
Jimenez, Connie R. ;
Berns, Anton .
CELL REPORTS, 2019, 27 (11) :3345-+
[7]   Integrating single-cell transcriptomic data across different conditions, technologies, and species [J].
Butler, Andrew ;
Hoffman, Paul ;
Smibert, Peter ;
Papalexi, Efthymia ;
Satija, Rahul .
NATURE BIOTECHNOLOGY, 2018, 36 (05) :411-+
[8]   Small Cell Lung Cancer: Where Do We Go From Here? [J].
Byers, Lauren Averett ;
Rudin, Charles M. .
CANCER, 2015, 121 (05) :664-672
[9]   An Epithelial-Mesenchymal Transition Gene Signature Predicts Resistance to EGFR and PI3K Inhibitors and Identifies Axl as a Therapeutic Target for Overcoming EGFR Inhibitor Resistance [J].
Byers, Lauren Averett ;
Diao, Lixia ;
Wang, Jing ;
Saintigny, Pierre ;
Girard, Luc ;
Peyton, Michael ;
Shen, Li ;
Fan, Youhong ;
Giri, Uma ;
Tumula, Praveen K. ;
Nilsson, Monique B. ;
Gudikote, Jayanthi ;
Tran, Hai ;
Cardnell, Robert J. G. ;
Bearss, David J. ;
Warner, Steven L. ;
Foulks, Jason M. ;
Kanner, Steven B. ;
Gandhi, Varsha ;
Krett, Nancy ;
Rosen, Steven T. ;
Kim, Edward S. ;
Herbst, Roy S. ;
Blumenschein, George R. ;
Lee, J. Jack ;
Lippman, Scott M. ;
Ang, K. Kian ;
Mills, Gordon B. ;
Hong, Waun K. ;
Weinstein, John N. ;
Wistuba, Ignacio I. ;
Coombes, Kevin R. ;
Minna, John D. ;
Heymach, John V. .
CLINICAL CANCER RESEARCH, 2013, 19 (01) :279-290
[10]   Proteomic Profiling Identifies Dysregulated Pathways in Small Cell Lung Cancer and Novel Therapeutic Targets Including PARP1 [J].
Byers, Lauren Averett ;
Wang, Jing ;
Nilsson, Monique B. ;
Fujimoto, Junya ;
Saintigny, Pierre ;
Yordy, John ;
Giri, Uma ;
Peyton, Michael ;
Fan, You Hong ;
Diao, Lixia ;
Masrorpour, Fatemeh ;
Shen, Li ;
Liu, Wenbin ;
Duchemann, Boris ;
Tumula, Praveen ;
Bhardwaj, Vikas ;
Welsh, James ;
Weber, Stephanie ;
Glisson, Bonnie S. ;
Kalhor, Neda ;
Wistuba, Ignacio I. ;
Girard, Luc ;
Lippman, Scott M. ;
Mills, Gordon B. ;
Coombes, Kevin R. ;
Weinstein, John N. ;
Minna, John D. ;
Heymach, John V. .
CANCER DISCOVERY, 2012, 2 (09) :798-811