About the intrinsic photochemical properties of the 11-cis retinal chromophore:: computational clues for a trap state and a lever effect in Rhodopsin catalysis

被引:31
作者
Cembran, Alessandro
Gonzalez-Luque, Remedios
Serrano-Andres, Luis
Merchan, Manuela
Garavelli, Marco
机构
[1] Univ Bologna, Dipartimento Chim G Ciamician, I-40126 Bologna, Italy
[2] Univ Valencia, Inst Ciencia Mol, Dept Quim Fis, E-46100 Valencia, Spain
关键词
Ab initio calculations; reaction mechanisms; photoisomerization; retinal; conical intersections;
D O I
10.1007/s00214-007-0259-9
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
CASPT2//CASSCF/6-31G* computations are used on the singlet S-1 and S-2 states to map the photoisomerization process of the 11-cis retinal protonated Schiff base in vacuo and to characterize its optical properties. It is shown that the spectroscopic observations recorded in Rhodopsin are reproduced quite well, calling for a substantially neutral effect of the protein. Furthermore, a rationale is proposed for the unreactive population recently observed in Rhodopsin, which is here addressed to the accessible S-2 state, behaving as a trap. The experimental transient absorption and (absorption-wavelength dependent) emission are discussed and interpreted under the light of this novel model. Finally, a planarization of the beta-ionone ring is observed on S-1, which may cause a steric lever effect into the protein pocket, thus assisting photoisomerization catalysis. The reported results constitute a solid reference for further studies aimed to rationalize the effect of the environment on the photochemical reactivity of retinal chromophores.
引用
收藏
页码:173 / 183
页数:11
相关论文
共 56 条
[41]  
KOCHENDOERFER GG, 1996, J PHYS CHEM, P100
[42]   THE CASSCF STATE INTERACTION METHOD [J].
MALMQVIST, PA ;
ROOS, BO .
CHEMICAL PHYSICS LETTERS, 1989, 155 (02) :189-194
[43]  
Mathies R., 2000, Handbook of Biological Physics, P55
[44]   LOCATION OF SADDLE POINTS AND MINIMUM ENERGY PATHS BY A CONSTRAINED SIMPLEX OPTIMIZATION PROCEDURE [J].
MULLER, K ;
BROWN, LD .
THEORETICA CHIMICA ACTA, 1979, 53 (01) :75-93
[45]  
NEEDLEMAN R, 1995, CRC HDB ORGANIC PHOT, P1508
[46]   S1 and S2 excited states of gas-phase Schiff-base retinal chromophores -: art. no. 018304 [J].
Nielsen, IB ;
Lammich, L ;
Andersen, LH .
PHYSICAL REVIEW LETTERS, 2006, 96 (01)
[47]   The retinal conformation and its environment in rhodopsin in light of a new 2.2 Å crystal structure [J].
Okada, T ;
Sugihara, M ;
Bondar, AN ;
Elstner, M ;
Entel, P ;
Buss, V .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 342 (02) :571-583
[48]  
Ottolenghi M, 1995, ISR J CHEM, V35, pU3
[49]   Combined QM/MM study of the opsin shift in bacteriorhodopsin [J].
Rajamani, R ;
Gao, JL .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2002, 23 (01) :96-105
[50]   Ground and excited states of retinal Schiff base chromophores by multiconfigurational perturbation theory [J].
Sekharan, Sivakumar ;
Weingart, Oliver ;
Buss, Volker .
BIOPHYSICAL JOURNAL, 2006, 91 (01) :L7-L9