The anisotropic structure and dynamics of the hydration shell of a benzene solute in liquid water have been investigated by means of ab initio molecular dynamics simulations using the BLYP (Becke-Lee-Yang-Parr) and dispersion corrected BLYP-D functionals. The main focus has been to look at the influence of pi-hydrogen-bonding and hydrophobic interactions on the distance and angle resolved various structural and dynamic properties of solvation shell. The structure of hydration shell water molecules around benzene is found to be highly anisotropic as revealed by the radial distribution functions of different conical regions and joint radial/angular distribution functions. The benzene water dimer potential energy curves are calculated for a variety of orientations of water along the axial and equatorial directions for both BLYP and BLYP-D functionals. The simulation results of the hydration shell structure of benzene, particularly the axial and equatorial benzene water RDFs are discussed based on the differences in the benzene water potential energies for different orientations and functionals. The inter-particle distance/angle correlations show an enhanced water structure in the solvation shell of benzene compared to that between the solvation shell and bulk and also between the bulk molecules. On average, a single pi H-bond is found to be formed between water and benzene in the 45 axial conical region of the solvation shell. The pi H-bonded water molecules are found to have faster translational dynamics and also found to follow a fast jump mechanism of reorientation to change their hydrogen bonded partners. The presence of pi-hydrogen-bonded water makes the overall dynamics of the axial region faster than that of the equatorial region where the water molecules are hydrophobically solvated and hydrogen bonded to other water molecules.
机构:
Van Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
Van Lang Univ, Fac Mech Elect & Comp Engn, Sch Technol, Ho Chi Minh City 700000, VietnamVan Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
Ho, Thi H.
Do, Tuong Ha
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Ton Duc Thang Univ, Fac Appl Sci, Ho Chi Minh City 700000, VietnamVan Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
Do, Tuong Ha
Tong, Hien Duy
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Vietnamese German Univ, Fac Engn, Thu Dau Mot City, Binh Duong Prov, VietnamVan Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
Tong, Hien Duy
Meijer, Evert Jan
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Univ Amsterdam, Van t Hoff Inst Mol Sci, NL-1012 WX Amsterdam, NetherlandsVan Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
Meijer, Evert Jan
Trinh, Thuat T.
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Norwegian Univ Sci & Technol, Dept Chem, PoreLab, NO-7491 Trondheim, NorwayVan Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
机构:
Univ Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
Univ Utah, Dept Chem, Salt Lake City, UT 84112 USAUniv Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
Paesani, Francesco
Xantheas, Sotiris S.
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Pacific NW Natl Lab, Div Chem & Mat Sci, Richland, WA 99352 USAUniv Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
Xantheas, Sotiris S.
Voth, Gregory A.
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Univ Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
Univ Utah, Dept Chem, Salt Lake City, UT 84112 USAUniv Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
机构:
Van Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
Van Lang Univ, Fac Mech Elect & Comp Engn, Sch Technol, Ho Chi Minh City 700000, VietnamVan Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
Ho, Thi H.
Do, Tuong Ha
论文数: 0引用数: 0
h-index: 0
机构:
Ton Duc Thang Univ, Fac Appl Sci, Ho Chi Minh City 700000, VietnamVan Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
Do, Tuong Ha
Tong, Hien Duy
论文数: 0引用数: 0
h-index: 0
机构:
Vietnamese German Univ, Fac Engn, Thu Dau Mot City, Binh Duong Prov, VietnamVan Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
Tong, Hien Duy
Meijer, Evert Jan
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h-index: 0
机构:
Univ Amsterdam, Van t Hoff Inst Mol Sci, NL-1012 WX Amsterdam, NetherlandsVan Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
Meijer, Evert Jan
Trinh, Thuat T.
论文数: 0引用数: 0
h-index: 0
机构:
Norwegian Univ Sci & Technol, Dept Chem, PoreLab, NO-7491 Trondheim, NorwayVan Lang Univ, Inst Computat Sci & Artificial Intelligence, Lab Computat Phys, Ho Chi Minh City 700000, Vietnam
机构:
Univ Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
Univ Utah, Dept Chem, Salt Lake City, UT 84112 USAUniv Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
Paesani, Francesco
Xantheas, Sotiris S.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Div Chem & Mat Sci, Richland, WA 99352 USAUniv Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
Xantheas, Sotiris S.
Voth, Gregory A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
Univ Utah, Dept Chem, Salt Lake City, UT 84112 USAUniv Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA