Prediction of the hydrophobicity of platinum(IV) complexes based on molecular surface properties

被引:5
作者
Zou, Jian-Wei [1 ]
Cui, Guang-Yang [2 ]
Huang, Meilan [3 ]
Hu, Gui-Xiang [1 ]
Jiang, Yong-Jun [1 ]
机构
[1] NingboTech Univ, Sch Biol & Chem Engn, Ningbo 315100, Peoples R China
[2] Zhejiang Univ, Coll Chem & Biol Engn, Hangzhou 310058, Peoples R China
[3] Queens Univ Belfast, Sch Chem & Chem Engn, David Keir Bldg,Stranmillis Rd, Belfast BT9 5AG, Antrim, North Ireland
关键词
Hydrophobic index; Electrostatic potential; Structural descriptor; QSPR; Platinum complex; Nonlinear modeling; SUPPORT VECTOR MACHINES; ELECTROSTATIC POTENTIALS; PHYSICOCHEMICAL PROPERTIES; PARTITION-COEFFICIENTS; GAUSSIAN-PROCESSES; PT(IV) COMPLEXES; LIPOPHILICITY; DESCRIPTORS; MODELS; CISPLATIN;
D O I
10.1016/j.jinorgbio.2021.111373
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A quantitative structure-property relationship (QSPR) study was performed for predicting the hydrophobicity of Pt(IV) complexes. Two four-parameter equations, one based solely on structural descriptors derived from electrostatic potentials (ESPs) on molecular surface, and the other integrated ESP descriptors with molecular surface area (AS), were firstly constructed. Mechanistic interpretations of the structural descriptors introduced were elucidated in terms of solute-solvent intermolecular interactions. Subsequently, several up-to-date modeling techniques, including support vector machine (SVM), least-squares support vector machine (LSSVM), random forest (RF) and Gaussian process (GP), were utilized to build the nonlinear models. Systematical validations including leave-one-out cross-validation, the validation for test set, as well as a more rigorous Monte Carlo cross-validation were performed to verify the reliability of the constructed models. The predictive performances of the four different nonlinear modeling methods follow the order of LSSVM approximate to GP > RF > SVM. The pure-ESP-based models are generally inferior to the AS-integrated ones. Comparisons with previous results were made.Y
引用
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页数:8
相关论文
共 54 条
  • [1] [Anonymous], 1990, REGRESSION DIAGNOSTI
  • [2] Boulikas T, 2003, ONCOL REP, V10, P1663
  • [3] Random forests
    Breiman, L
    [J]. MACHINE LEARNING, 2001, 45 (01) : 5 - 32
  • [4] Support Vector Machines for classification and regression
    Brereton, Richard G.
    Lloyd, Gavin R.
    [J]. ANALYST, 2010, 135 (02) : 230 - 267
  • [5] Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies
    Bulat, Felipe A.
    Toro-Labbe, Alejandro
    Brinck, Tore
    Murray, Jane S.
    Politzer, Peter
    [J]. JOURNAL OF MOLECULAR MODELING, 2010, 16 (11) : 1679 - 1691
  • [6] Molecular Interaction Fields (MIFs) to Predict Lipophilicity and ADME Profile of Antitumor Pt(II) Complexes
    Caron, Giulia
    Ravera, Mauro
    Ermondi, Giuseppe
    [J]. PHARMACEUTICAL RESEARCH, 2011, 28 (03) : 640 - 646
  • [7] QSAR and QSPR based solely on surface properties?
    Clark, T
    [J]. JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2004, 22 (06) : 519 - 525
  • [8] Least-squares support vector machines for chemometrics: an introduction and evaluation
    Cogdill, RP
    Dardenne, P
    [J]. JOURNAL OF NEAR INFRARED SPECTROSCOPY, 2004, 12 (02) : 93 - 100
  • [9] Comments on the Definition of the Q2 Parameter for QSAR Validation
    Consonni, Viviana
    Ballabio, Davide
    Todeschini, Roberto
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2009, 49 (07) : 1669 - 1678
  • [10] Cisplatin in cancer therapy: Molecular mechanisms of action
    Dasari, Shaloam
    Tchounwou, Paul Bernard
    [J]. EUROPEAN JOURNAL OF PHARMACOLOGY, 2014, 740 : 364 - 378