共 124 条
Target amplification for broad spectrum microbial diagnostics and detection
被引:9
作者:

Leski, Tomasz A.
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机构:
USN, Res Lab, Ctr Bio Mol Sci & Engn, Washington, DC 20375 USA
Nova Res Inc, Alexandria, VA USA USN, Res Lab, Ctr Bio Mol Sci & Engn, Washington, DC 20375 USA

Malanoski, Anthony P.
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h-index: 0
机构:
USN, Res Lab, Ctr Bio Mol Sci & Engn, Washington, DC 20375 USA USN, Res Lab, Ctr Bio Mol Sci & Engn, Washington, DC 20375 USA

Stenger, David A.
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h-index: 0
机构:
USN, Res Lab, Ctr Bio Mol Sci & Engn, Washington, DC 20375 USA USN, Res Lab, Ctr Bio Mol Sci & Engn, Washington, DC 20375 USA

Lin, Baochuan
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h-index: 0
机构:
USN, Res Lab, Ctr Bio Mol Sci & Engn, Washington, DC 20375 USA USN, Res Lab, Ctr Bio Mol Sci & Engn, Washington, DC 20375 USA
机构:
[1] USN, Res Lab, Ctr Bio Mol Sci & Engn, Washington, DC 20375 USA
[2] Nova Res Inc, Alexandria, VA USA
关键词:
16S rRNA;
microarrays;
multiplex PCR;
random amplification;
small subunit rRNA;
strand displacement amplification;
whole genome amplification;
WHOLE-GENOME AMPLIFICATION;
16S RIBOSOMAL-RNA;
MICROARRAY-BASED DETECTION;
MULTIPLE DISPLACEMENT AMPLIFICATION;
RESPIRATORY-TRACT INFECTIONS;
BASE STACKING HYBRIDIZATION;
OLIGONUCLEOTIDE MICROARRAY;
DNA MICROARRAY;
PATHOGEN DETECTION;
BACTERIAL PATHOGENS;
D O I:
10.2217/FMB.09.126
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
Microarrays are massively parallel detection platforms that were first used extensively for gene expression studies, but have also been successfully applied to microbial detection in a number of diverse fields requiring broad-range microbial identification, This technology has enabled researchers to gain an insight into the microbial diversity of environmental samples, facilitated discovery of a number of new pathogens and enabled studies of multipathogen infections. In contrast to gene expression studies, the concentrations of targets in analyzed samples for microbial detection are usually much lower, and require the use of nucleic acid amplification techniques, The rapid advancement of manufacturing technologies has increased the content of the microarrays; thus, the required amplification is a challenging problem. The constant parallel improvements in both microarray and sample amplification techniques in the near future may lead to a radical progression in medical diagnostics and systems for efficient detection of microorganisms in the environment.
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收藏
页码:191 / 203
页数:13
相关论文
共 124 条
[71]
Use of semiconductor-based oligonucleotide microarrays for influenza A virus subtype identification and sequencing
[J].
Lodes, MJ
;
Suciu, D
;
Elliott, M
;
Stover, AG
;
Ross, M
;
Caraballo, M
;
Dix, K
;
Crye, J
;
Webby, RJ
;
Lyon, WJ
;
Danley, DL
;
McShea, A
.
JOURNAL OF CLINICAL MICROBIOLOGY,
2006, 44 (04)
:1209-1218

Lodes, MJ
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

Suciu, D
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

Elliott, M
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

Stover, AG
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

Ross, M
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

Caraballo, M
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

Dix, K
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

Crye, J
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

Webby, RJ
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

Lyon, WJ
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

Danley, DL
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA

McShea, A
论文数: 0 引用数: 0
h-index: 0
机构: CombiMatrix Corp, Mukilteo, WA 98275 USA
[72]
Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA -: art. no. e129
[J].
Lovmar, L
;
Fredriksson, M
;
Liljedahl, U
;
Sigurdsson, S
;
Syvänen, AC
.
NUCLEIC ACIDS RESEARCH,
2003, 31 (21)
:e129

Lovmar, L
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Uppsala Hosp, Res Dept 2, Dept Med Sci, SE-75185 Uppsala, Sweden Univ Uppsala Hosp, Res Dept 2, Dept Med Sci, SE-75185 Uppsala, Sweden

Fredriksson, M
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Uppsala Hosp, Res Dept 2, Dept Med Sci, SE-75185 Uppsala, Sweden Univ Uppsala Hosp, Res Dept 2, Dept Med Sci, SE-75185 Uppsala, Sweden

Liljedahl, U
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Uppsala Hosp, Res Dept 2, Dept Med Sci, SE-75185 Uppsala, Sweden Univ Uppsala Hosp, Res Dept 2, Dept Med Sci, SE-75185 Uppsala, Sweden

Sigurdsson, S
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Uppsala Hosp, Res Dept 2, Dept Med Sci, SE-75185 Uppsala, Sweden Univ Uppsala Hosp, Res Dept 2, Dept Med Sci, SE-75185 Uppsala, Sweden

Syvänen, AC
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Uppsala Hosp, Res Dept 2, Dept Med Sci, SE-75185 Uppsala, Sweden Univ Uppsala Hosp, Res Dept 2, Dept Med Sci, SE-75185 Uppsala, Sweden
[73]
Highly parallel microbial diagnostics using oligonucleotide microarrays
[J].
Loy, A
;
Bodrossy, L
.
CLINICA CHIMICA ACTA,
2006, 363 (1-2)
:106-119

Loy, A
论文数: 0 引用数: 0
h-index: 0
机构: ARC Seibersdorf Res GMBH, Dept Bioresources Microbiol, A-2444 Seibersdorf, Austria

Bodrossy, L
论文数: 0 引用数: 0
h-index: 0
机构:
ARC Seibersdorf Res GMBH, Dept Bioresources Microbiol, A-2444 Seibersdorf, Austria ARC Seibersdorf Res GMBH, Dept Bioresources Microbiol, A-2444 Seibersdorf, Austria
[74]
DNA microarrays in the clinic: infectious diseases
[J].
Mikhailovich, Vladimir
;
Gryadunov, Dmitry
;
Kolchinsky, Alexander
;
Makarov, Alexander A.
;
Zasedatelev, Alexander
.
BIOESSAYS,
2008, 30 (07)
:673-682

论文数: 引用数:
h-index:
机构:

Gryadunov, Dmitry
论文数: 0 引用数: 0
h-index: 0
机构:
Russian Acad Sci, VA Engelhardt Mol Biol Inst, 32 Vavilov St,V-334, Moscow 119991, Russia Russian Acad Sci, VA Engelhardt Mol Biol Inst, 32 Vavilov St,V-334, Moscow 119991, Russia

Kolchinsky, Alexander
论文数: 0 引用数: 0
h-index: 0
机构:
Hlth Front Line Ltd, Champaign, IL USA Russian Acad Sci, VA Engelhardt Mol Biol Inst, 32 Vavilov St,V-334, Moscow 119991, Russia

Makarov, Alexander A.
论文数: 0 引用数: 0
h-index: 0
机构:
Russian Acad Sci, VA Engelhardt Mol Biol Inst, 32 Vavilov St,V-334, Moscow 119991, Russia Russian Acad Sci, VA Engelhardt Mol Biol Inst, 32 Vavilov St,V-334, Moscow 119991, Russia

论文数: 引用数:
h-index:
机构:
[75]
Different influences of DNA purity indices and quantity on PCR-based DGGE and functional gene microarray in soil microbial community study
[J].
Ning, Jing
;
Liebich, Jost
;
Kaestner, Matthias
;
Zhou, Jizhong
;
Schaeffer, Andreas
;
Burauel, Peter
.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY,
2009, 82 (05)
:983-993

Ning, Jing
论文数: 0 引用数: 0
h-index: 0
机构:
Forschungszentrum Julich, Agrosphere Inst ICG 4, D-52425 Julich, Germany Forschungszentrum Julich, Agrosphere Inst ICG 4, D-52425 Julich, Germany

Liebich, Jost
论文数: 0 引用数: 0
h-index: 0
机构:
Forschungszentrum Julich, Agrosphere Inst ICG 4, D-52425 Julich, Germany Forschungszentrum Julich, Agrosphere Inst ICG 4, D-52425 Julich, Germany

Kaestner, Matthias
论文数: 0 引用数: 0
h-index: 0
机构:
UFZ Helmholtz Ctr Environm Res, Dept Bioremediat, D-04318 Leipzig, Germany Forschungszentrum Julich, Agrosphere Inst ICG 4, D-52425 Julich, Germany

Zhou, Jizhong
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Oklahoma, Inst Environm Genom, Norman, OK 73019 USA Forschungszentrum Julich, Agrosphere Inst ICG 4, D-52425 Julich, Germany

Schaeffer, Andreas
论文数: 0 引用数: 0
h-index: 0
机构:
Rhein Westfal TH Aachen, Inst Environm Res, D-52074 Aachen, Germany Forschungszentrum Julich, Agrosphere Inst ICG 4, D-52425 Julich, Germany

Burauel, Peter
论文数: 0 引用数: 0
h-index: 0
机构:
Forschungszentrum Julich, Agrosphere Inst ICG 4, D-52425 Julich, Germany Forschungszentrum Julich, Agrosphere Inst ICG 4, D-52425 Julich, Germany
[76]
DNA microarray technique for detection and identification of seven Flaviviruses pathogenic for man
[J].
Nordström, H
;
Falk, KI
;
Lindegren, G
;
Mouzavi-Jazi, M
;
Waldén, A
;
Elgh, F
;
Nilsson, P
;
Lundkvist, A
.
JOURNAL OF MEDICAL VIROLOGY,
2005, 77 (04)
:528-540

Nordström, H
论文数: 0 引用数: 0
h-index: 0
机构: Swedish Inst Infect Dis Control, Solna, Sweden

Falk, KI
论文数: 0 引用数: 0
h-index: 0
机构: Swedish Inst Infect Dis Control, Solna, Sweden

Lindegren, G
论文数: 0 引用数: 0
h-index: 0
机构: Swedish Inst Infect Dis Control, Solna, Sweden

Mouzavi-Jazi, M
论文数: 0 引用数: 0
h-index: 0
机构: Swedish Inst Infect Dis Control, Solna, Sweden

Waldén, A
论文数: 0 引用数: 0
h-index: 0
机构: Swedish Inst Infect Dis Control, Solna, Sweden

Elgh, F
论文数: 0 引用数: 0
h-index: 0
机构: Swedish Inst Infect Dis Control, Solna, Sweden

Nilsson, P
论文数: 0 引用数: 0
h-index: 0
机构: Swedish Inst Infect Dis Control, Solna, Sweden

Lundkvist, A
论文数: 0 引用数: 0
h-index: 0
机构: Swedish Inst Infect Dis Control, Solna, Sweden
[77]
Oligonucleotide microarray for identification of Bacillus anthracis based on intergenic transcribed spacers in ribosomal DNA
[J].
Nübel, U
;
Schmidt, PM
;
Reiss, E
;
Bier, F
;
Beyer, W
;
Naumann, D
.
FEMS MICROBIOLOGY LETTERS,
2004, 240 (02)
:215-223

Nübel, U
论文数: 0 引用数: 0
h-index: 0
机构: Robert Koch Inst, D-13353 Berlin, Germany

Schmidt, PM
论文数: 0 引用数: 0
h-index: 0
机构: Robert Koch Inst, D-13353 Berlin, Germany

Reiss, E
论文数: 0 引用数: 0
h-index: 0
机构: Robert Koch Inst, D-13353 Berlin, Germany

Bier, F
论文数: 0 引用数: 0
h-index: 0
机构: Robert Koch Inst, D-13353 Berlin, Germany

Beyer, W
论文数: 0 引用数: 0
h-index: 0
机构: Robert Koch Inst, D-13353 Berlin, Germany

Naumann, D
论文数: 0 引用数: 0
h-index: 0
机构: Robert Koch Inst, D-13353 Berlin, Germany
[78]
Development of a DNA microarray for the simultaneous detection and genotyping of noroviruses
[J].
Pagotto, Franco
;
Corneau, Nathalie
;
Mattison, Kirsten
;
Bidawid, Sabah
.
JOURNAL OF FOOD PROTECTION,
2008, 71 (07)
:1434-1441

Pagotto, Franco
论文数: 0 引用数: 0
h-index: 0
机构:
Sir FG Bunting Res Ctr, Food Directorate Hlth Prod & Food Branch, Bur Microbial Hazards, Microbiol Res Div, Ottawa, ON K1A 0K9, Canada Sir FG Bunting Res Ctr, Food Directorate Hlth Prod & Food Branch, Bur Microbial Hazards, Microbiol Res Div, Ottawa, ON K1A 0K9, Canada

Corneau, Nathalie
论文数: 0 引用数: 0
h-index: 0
机构:
Sir FG Bunting Res Ctr, Food Directorate Hlth Prod & Food Branch, Bur Microbial Hazards, Microbiol Res Div, Ottawa, ON K1A 0K9, Canada Sir FG Bunting Res Ctr, Food Directorate Hlth Prod & Food Branch, Bur Microbial Hazards, Microbiol Res Div, Ottawa, ON K1A 0K9, Canada

Mattison, Kirsten
论文数: 0 引用数: 0
h-index: 0
机构:
Sir FG Bunting Res Ctr, Food Directorate Hlth Prod & Food Branch, Bur Microbial Hazards, Microbiol Res Div, Ottawa, ON K1A 0K9, Canada Sir FG Bunting Res Ctr, Food Directorate Hlth Prod & Food Branch, Bur Microbial Hazards, Microbiol Res Div, Ottawa, ON K1A 0K9, Canada

Bidawid, Sabah
论文数: 0 引用数: 0
h-index: 0
机构:
Sir FG Bunting Res Ctr, Food Directorate Hlth Prod & Food Branch, Bur Microbial Hazards, Microbiol Res Div, Ottawa, ON K1A 0K9, Canada Sir FG Bunting Res Ctr, Food Directorate Hlth Prod & Food Branch, Bur Microbial Hazards, Microbiol Res Div, Ottawa, ON K1A 0K9, Canada
[79]
Panmicrobial oligonucleotide array for diagnosis of infectious diseases
[J].
Palacios, Gustavo
;
Quan, Phenix-Lan
;
Jabado, Omar J.
;
Conlan, Sean
;
Hirschberg, David L.
;
Liu, Yang
;
Zhai, Junhui
;
Renwick, Neil
;
Hui, Jeffrey
;
Hegyi, Hedi
;
Grolla, Allen
;
Strong, James E.
;
Towner, Jonathan S.
;
Geisbert, Thomas W.
;
Jahrling, Peter B.
;
Buechen-Osmond, Cornelia
;
Ellerbrok, Heinz
;
Sanchez-Seco, Maria Paz
;
Lussier, Yves
;
Formenty, Pierre
;
Nichol, Stuart T.
;
Feldmann, Heinz
;
Briese, Thomas
;
Lipkin, W. Ian
.
EMERGING INFECTIOUS DISEASES,
2007, 13 (01)
:73-81

Palacios, Gustavo
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Quan, Phenix-Lan
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Jabado, Omar J.
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Conlan, Sean
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Hirschberg, David L.
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Liu, Yang
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Zhai, Junhui
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Renwick, Neil
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Hui, Jeffrey
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Hegyi, Hedi
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Grolla, Allen
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Strong, James E.
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Towner, Jonathan S.
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Geisbert, Thomas W.
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Jahrling, Peter B.
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Buechen-Osmond, Cornelia
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Ellerbrok, Heinz
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Sanchez-Seco, Maria Paz
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Lussier, Yves
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Formenty, Pierre
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Nichol, Stuart T.
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Feldmann, Heinz
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Briese, Thomas
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA

Lipkin, W. Ian
论文数: 0 引用数: 0
h-index: 0
机构: Columbia Univ, Jerome L & Dawn Greene Infect Dis Lab, Mailman Sch Publ Hlth, New York, NY 10032 USA
[80]
Detection of pathogenic Vibrio spp. in shellfish by using multiplex PCR and DNA microarrays
[J].
Panicker, G
;
Call, DR
;
Krug, MJ
;
Bej, AK
.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY,
2004, 70 (12)
:7436-7444

Panicker, G
论文数: 0 引用数: 0
h-index: 0
机构: Univ Alabama, Dept Biol, Birmingham, AL 35294 USA

Call, DR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Alabama, Dept Biol, Birmingham, AL 35294 USA

Krug, MJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Alabama, Dept Biol, Birmingham, AL 35294 USA

Bej, AK
论文数: 0 引用数: 0
h-index: 0
机构: Univ Alabama, Dept Biol, Birmingham, AL 35294 USA