IR Spectra of Crystalline Nucleobases: Combination of Periodic Harmonic Calculations with Anharmonic Corrections Based on Finite Models

被引:20
作者
Bec, Krzysztof B. [1 ,2 ]
Grabska, Justyna [1 ]
Czarnecki, Miroslaw A. [2 ]
Huck, Christian W. [1 ]
Wojcik, Marek. J. [3 ]
Nakajima, Takahito [4 ]
Ozaki, Yukihiro [5 ]
机构
[1] Univ Innsbruck, Inst Analyt Chem, A-6020 Innsbruck, Austria
[2] Univ Wroclaw, Fac Chem, F Joliot Curie 14, PL-50383 Wroclaw, Poland
[3] Jagiellonian Univ, Fac Chem, Gronostajowa 2, PL-30387 Krakow, Poland
[4] RIKEN Ctr Computat Sci, Chuo Ku, 7-1-26 Minatojima Minami Machi, Kobe, Hyogo 6500047, Japan
[5] Kwansei Gakuin Univ, Sch Sci & Technol, Dept Chem, Sanda, Hyogo 6691337, Japan
关键词
LASER-RAMAN SPECTRA; NUCLEIC-ACID BASES; DENSITY-FUNCTIONAL THEORY; INFRARED-SPECTRA; FT-IR; VIBRATIONAL SPECTROSCOPY; MOLECULAR-STRUCTURE; MATRIX-ISOLATION; DNA; GUANINE;
D O I
10.1021/acs.jpcb.9b06285
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
This work reports a theoretical study of infrared (IR) spectra of four nucleobases (adenine, cytosine, guanine, and thymine) in the crystalline state. The effects responsible for the fine spectral features were revealed, and the nonfundamental bands significantly contributing to the IR fingerprint region were successfully reproduced. Additionally, we compared the fundamental bands simulated for periodic models in harmonic approximation with the results obtained for finite models in anharmonic approximation. On this basis, we concluded that accurate description of the chemical neighborhood is more essential for the IR fingerprint region than the anharmonicity. Comparison with previous results indicates that the vibrational properties and the nature of intermolecular interactions of nucleobases in the crystalline state remain similar to those in solution. Therefore, the conclusions obtained for well-defined crystalline structures of nucleobases are general and helpful in understanding the vibrational spectra and properties of nucleobases and their derivatives. Finally, this work evidences that anharmonic force field based on finite models may be applied as an inexpensive correction to the harmonic spectrum of an infinite periodic system.
引用
收藏
页码:10001 / 10013
页数:13
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