Protein-ligand interactions investigated by thermal shift assays (TSA) and dual polarization interferometry (DPI)

被引:76
作者
Groftehauge, Morten K. [1 ]
Hajizadeh, Nelly R. [1 ]
Swann, Marcus J. [2 ]
Pohl, Ehmke [3 ,4 ]
机构
[1] Univ Durham, Dept Chem, Durham DH1 3LE, England
[2] Biolin Sci, Farfield, Stockport SK1 3SU, Cheshire, England
[3] Univ Durham, Dept Chem, Durham DH1 3LE, England
[4] Univ Durham, Sch Biol & Biomed Sci, Durham DH1 3LE, England
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2015年 / 71卷
基金
英国惠康基金;
关键词
thermal shift assays; dual polarization interferometry; protein-ligand interactions; ISOTHERMAL TITRATION CALORIMETRY; DRUG DISCOVERY; MICROSCALE THERMOPHORESIS; CONFORMATIONAL-CHANGES; LIGHT-SCATTERING; BINDING; CRYSTALLIZATION; THERMOFLUOR; OPTIMIZATION; RECOGNITION;
D O I
10.1107/S1399004714016617
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Over the last decades, a wide range of biophysical techniques investigating protein-ligand interactions have become indispensable tools to complement high-resolution crystal structure determinations. Current approaches in solution range from high-throughput-capable methods such as thermal shift assays (TSA) to highly accurate techniques including microscale thermophoresis (MST) and isothermal titration calorimetry (ITC) that can provide a full thermodynamic description of binding events. Surface-based methods such as surface plasmon resonance (SPR) and dual polarization interferometry (DPI) allow real-time measurements and can provide kinetic parameters as well as binding constants. DPI provides additional spatial information about the binding event. Here, an account is presented of new developments and recent applications of TSA and DPI connected to crystallography.
引用
收藏
页码:36 / 44
页数:9
相关论文
共 42 条
[1]   Binding of transition metal ions to albumin: Sites, affinities and rates [J].
Bal, Wojciech ;
Sokolowska, Magdalena ;
Kurowska, Ewa ;
Faller, Peter .
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2013, 1830 (12) :5444-5455
[2]   Use of Dual Polarization Interferometry as a Diagnostic Tool for Protein Crystallization [J].
Boudjemline, Attia ;
Saridakis, Emmanuel ;
Swann, Marcus J. ;
Govada, Lata ;
Mavridis, Irene M. ;
Chayen, Naomi E. .
ANALYTICAL CHEMISTRY, 2011, 83 (20) :7881-7887
[3]   X-RAY-ANALYSIS OF D-XYLOSE ISOMERASE AT 1.9 A - NATIVE ENZYME IN COMPLEX WITH SUBSTRATE AND WITH A MECHANISM-DESIGNED INACTIVATOR [J].
CARRELL, HL ;
GLUSKER, JP ;
BURGER, V ;
MANFRE, F ;
TRITSCH, D ;
BIELLMANN, JF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1989, 86 (12) :4440-4444
[4]   Measurement and Differentiation of Ligand-Induced Calmodulin Conformations by Dual Polarization Interferometry [J].
Coan, Kristin E. D. ;
Swann, Marcus J. ;
Ottl, Johannes .
ANALYTICAL CHEMISTRY, 2012, 84 (03) :1586-1591
[5]   A new quantitative optical biosensor for protein characterisation [J].
Cross, GH ;
Reeves, AA ;
Brand, S ;
Popplewell, JF ;
Peel, LL ;
Swann, MJ ;
Freeman, NJ .
BIOSENSORS & BIOELECTRONICS, 2003, 19 (04) :383-390
[6]   Lessons from the Crystallographic Analysis of Small Molecule Binding to Human Serum Albumin [J].
Curry, Stephen .
DRUG METABOLISM AND PHARMACOKINETICS, 2009, 24 (04) :342-357
[7]   Thermofluor-based high-throughput stability optimization of proteins for structural studies [J].
Ericsson, Ulrika B. ;
Hallberg, B. Martin ;
DeTitta, George T. ;
Dekker, Niek ;
Nordlund, Par .
ANALYTICAL BIOCHEMISTRY, 2006, 357 (02) :289-298
[8]   Isothermal titration calorimetry: Experimental design, data analysis, and probing Macromolecule/Ligand binding and kinetic interactions [J].
Freyer, Matthew W. ;
Lewis, Edwin A. .
BIOPHYSICAL TOOLS FOR BIOLOGISTS: VOL 1 IN VITRO TECHNIQUES, 2008, 84 :79-113
[9]   Use of differential scanning fluorimetry to optimize the purification and crystallization of PLP-dependent enzymes [J].
Geders, Todd W. ;
Gustafson, Kathryn ;
Finzel, Barry C. .
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2012, 68 :596-600
[10]   Effect of acyl chain structure and bilayer phase state on binding and penetration of a supported lipid bilayer by HPA3 [J].
Hirst, Daniel J. ;
Lee, Tzong-Hsien ;
Swann, Marcus J. ;
Unabia, Sharon ;
Park, Yoonkyung ;
Hahm, Kyung-Soo ;
Aguilar, Marie Isabel .
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2011, 40 (04) :503-514