A novel Bioinformatic analysis for SARS CoV-2 isolated by Public Health Laboratory, USA

被引：0

作者：

Hemalatha, N. ^{[1
]}

Philip, Melcy ^{[1
]}

机构：

[1] St Aloysius Inst Management & Technol, Mangalore, India

来源：

RESEARCH JOURNAL OF BIOTECHNOLOGY | 2021年 / 16卷 / 05期

关键词：

COVID-19; BLAST; SARS; Clustal Omega; RESPIRATORY SYNDROME CORONAVIRUS;

D O I：

暂无

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

The outbreak of novel SARS CoV-2 has outraged people all over the world due to its astonishing capabilities to be pathogenic. Considering the severity of this disease, WHO declared COVID-19 as one of the pandemic diseases. Since this is an emerging, rapidly evolving situation, many nations have called for technology driven solutions, along with the acceleration of clinical research and trials. In this scenario of dire to find the solution, we have considered the whole genome of SARS CoV-2 strain, with GenBank id MT188339 and subjected it to the bioinformatic analysis like sequence similarity, phylogenetic analysis which shows evolutionary relationships and structure prediction of its protein.

引用

页码：211 / 218

页数：8

共 11 条

[1] Magic-BLAST, an accurate RNA-seq aligner for long and short reads [J].

Boratyn, Grzegorz M. ;

Thierry-Mieg, Jean ;

Thierry-Mieg, Danielle ;

Busby, Ben ;

Madden, Thomas L. .

BMC BIOINFORMATICS, 2019, 20 (1)

[2] Middle East Respiratory Syndrome Coronavirus: Another Zoonotic Betacoronavirus Causing SARS-Like Disease [J].

Chan, Jasper F. W. ;

Lau, Susanna K. P. ;

To, Kelvin K. W. ;

Cheng, Vincent C. C. ;

Woo, Patrick C. Y. ;

Yuen, Kwok-Yung .

CLINICAL MICROBIOLOGY REVIEWS, 2015, 28 (02) :465-522

[3]

Chan JFW, 2020, EMERG MICROBES INFEC, V9, P221, DOI [10.1038/s41591-020-0897-1, 10.1093/cid/ciaa344, 10.1080/22221751.2020.1719902]

[4] Interspecies transmission and emergence of novel viruses: lessons from bats and birds [J].

Chan, Jasper Fuk-Woo ;

To, Kelvin Kai-Wang ;

Tse, Herman ;

Jin, Dong-Yan ;

Yuen, Kwok-Yung .

TRENDS IN MICROBIOLOGY, 2013, 21 (10) :544-555

[5]

Chang Y., 2020, POTENTIAL THERAPEUTI, DOI [DOI 10.20944/PREPRINTS202002.0242.V1, 10.20944/preprints202002.0242.v1]

[6] Severe acute respiratory syndrome coronavirus as an agent of emerging and reemerging infection [J].

Cheng, Vincent C. C. ;

Lau, Susanna K. P. ;

Woo, Patrick C. Y. ;

Yuen, Kwok Yung .

CLINICAL MICROBIOLOGY REVIEWS, 2007, 20 (04) :660-+

[7] Discovering drugs to treat coronavirus disease 2019 (COVID-19) [J].

Dong, Liying ;

Hu, Shasha ;

Gao, Jianjun .

DRUG DISCOVERIES AND THERAPEUTICS, 2020, 14 (01) :58-60

[8]

Garnier J, 1996, METHOD ENZYMOL, V266, P540

[9] The EMBL-EBI search and sequence analysis tools APIs in 2019 [J].

Madeira, Fabio ;

Park, Young Mi ;

Lee, Joon ;

Buso, Nicola ;

Gur, Tamer ;

Madhusoodanan, Nandana ;

Basutkar, Prasad ;

Tivey, Adrian R. N. ;

Potter, Simon C. ;

Finn, Robert D. ;

Lopez, Rodrigo .

NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W636-W641

[10] Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal (Publication with Expression of Concern. See vol. 10, 2021) [J].

Sah, Ranjit ;

Rodriguez-Morales, Alfonso J. ;

Jha, Runa ;

Chu, Daniel K. W. ;

Gu, Haogao ;

Peiris, Malik ;

Bastola, Anup ;

Lal, Bibek Kumar ;

Ojha, Hemant Chanda ;

Rabaan, Ali A. ;

Zambrano, Lysien, I ;

Costello, Anthony ;

Morita, Kouichi ;

Pandey, Basu Dev ;

Poon, Leo L. M. .

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (11)

← 1 2 →