VALIDATION OF A DEEP LEARNING-BASED ALGORITHM FOR SEGMENTATION OF THE ELLIPSOID ZONE ON OPTICAL COHERENCE TOMOGRAPHY IMAGES OF AN USH2A-RELATED RETINAL DEGENERATION CLINICAL TRIAL

被引:9
作者
LOO, J. E. S. S. I. C. A. [1 ]
JAFFE, G. L. E. N. N. J. [2 ]
DUNCAN, J. A. C. Q. U. E. L. [3 ]
BIRCH, D. A. V. I. D. G. [4 ]
FARSIU, S. I. N. A. [1 ,2 ]
机构
[1] Duke Univ, Dept Biomed Engn, Durham, NC USA
[2] Duke Univ, Dept Ophthalmol, Med Ctr, Durham, NC USA
[3] Univ Calif San Francisco, Dept Ophthalmol, San Francisco, CA USA
[4] Retina Fdn, Southwest, Dallas, TX USA
来源
RETINA-THE JOURNAL OF RETINAL AND VITREOUS DISEASES | 2022年 / 42卷 / 07期
基金
美国国家卫生研究院;
关键词
automatic; clinical applicability; deep learning; ellipsoid zone; generalizability; optical coherence tomography; segmentation; USH2A-related retinal degeneration; VISUAL PROGNOSIS; USH2A;
D O I
10.1097/IAE.0000000000003448
中图分类号
R77 [眼科学];
学科分类号
100212 ;
摘要
Purpose: To assess the generalizability of a deep learning-based algorithm to segment the ellipsoid zone (EZ). Methods: The dataset consisted of 127 spectral-domain optical coherence tomography volumes from eyes of participants with USH2A-related retinal degeneration enrolled in the RUSH2A clinical trial (NCT03146078). The EZ was segmented manually by trained readers and automatically by deep OCT atrophy detection, a deep learning-based algorithm originally developed for macular telangiectasia Type 2. Performance was evaluated using the Dice similarity coefficient between the segmentations, and the absolute difference and Pearson's correlation of measurements of interest obtained from the segmentations. Results: With deep OCT atrophy detection, the average (mean +/- SD, median) Dice similarity coefficient was 0.79 +/- 0.27, 0.90. The average absolute difference in total EZ area was 0.62 +/- 1.41, 0.22 mm(2) with a correlation of 0.97. The average absolute difference in the maximum EZ length was 222 +/- 288, 126 mu m with a correlation of 0.97. Conclusion: Deep OCT atrophy detection segmented EZ in USH2A-related retinal degeneration with good performance. The algorithm is potentially generalizable to other diseases and other biomarkers of interest as well, which is an important aspect of clinical applicability.
引用
收藏
页码:1347 / 1355
页数:9
相关论文
共 26 条
  • [1] Abadi M, 2016, PROCEEDINGS OF OSDI'16: 12TH USENIX SYMPOSIUM ON OPERATING SYSTEMS DESIGN AND IMPLEMENTATION, P265
  • [2] [Anonymous], 2018, MATLAB, version 9.5.0, (R2018b)
  • [3] Ellipsoid Zone Mapping Parameters in Retinal Venous Occlusive Disease with Associated Macular Edema
    Banaee, Touka
    Singh, Rishi P.
    Champ, Kathryn
    Conti, Felipe F.
    Wai, Karen
    Bena, Jim
    Beven, Lucas
    Ehlers, Justis P.
    [J]. OPHTHALMOLOGY RETINA, 2018, 2 (08): : 836 - 841
  • [4] Deep learning for the segmentation of preserved photoreceptors on en face optical coherence tomography in two inherited retinal diseases
    Camino, Acner
    Wang, Zhuo
    Wang, Jie
    Pennesi, Mark E.
    Yang, Paul
    Huang, David
    Li, Dengwang
    Jia, Yali
    [J]. BIOMEDICAL OPTICS EXPRESS, 2018, 9 (07): : 3092 - 3105
  • [5] Effect of Ciliary Neurotrophic Factor on Retinal Neurodegeneration in Patients with Macular Telangiectasia Type 2 A Randomized Clinical Trial
    Chew, Emily Y.
    Clemons, Traci E.
    Jaffe, Glenn J.
    Johnson, Charles A.
    Farsiu, Sina
    Lad, Eleonora M.
    Guymer, Robyn
    Rosenfeld, Philip
    Hubschman, Jean-Pierre
    Constable, Ian
    Wiley, Henry
    Singerman, Lawrence J.
    Gillies, Mark
    Comer, Grant
    Blodi, Barbara
    Eliott, Dean
    Yan, Jiong
    Bird, Alan
    Friedlander, Martin
    [J]. OPHTHALMOLOGY, 2019, 126 (04) : 540 - 549
  • [6] De Silva T., 2021, OPHTHALMOL SCI, V1, P100060
  • [7] Visual Prognosis of Eyes Recovering From Macular Hole Surgery Through Automated Quantitative Analysis of Spectral-Domain Optical Coherence Tomography (SD-OCT) Scans
    de Sisternes, Luis
    Hu, Julia
    Rubin, Daniel L.
    Leng, Theodore
    [J]. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2015, 56 (08) : 4631 - 4643
  • [8] Baseline Visual Field Findings in the RUSH2A Study: Associated Factors and Correlation With Other Measures of Disease Severity
    Duncan, Jacque L.
    Liang, Wendi
    Maguire, Maureen G.
    Audo, Isabelle
    Ayala, Allison R.
    Birch, David G.
    Carroll, Joseph
    Cheetham, Janet K.
    Degli Esposti, Simona
    Durham, Todd A.
    Erker, Laura
    Farsiu, Sina
    Ferris, Frederick L.
    Heon, Elise
    Hufnagel, Robert B.
    Iannaccone, Alessandro
    Jaffe, Glenn J.
    Kay, Christine N.
    Michaelides, Michel
    Pennesi, Mark E.
    Sahel, Jose-Alain
    [J]. AMERICAN JOURNAL OF OPHTHALMOLOGY, 2020, 219 : 87 - 100
  • [9] Mutation of a gene encoding a protein with extracellular matrix motifs in usher syndrome type IIa
    Eudy, JD
    Weston, MD
    Yao, SF
    Hoover, DM
    Rehm, HL
    Ma-Edmonds, M
    Yan, D
    Ahmad, I
    Cheng, JJ
    Ayuso, C
    Cremers, C
    Davenport, S
    Moller, C
    Talmadge, CB
    Beisel, KW
    Tamayo, M
    Morton, CC
    Swaroop, A
    Kimberling, WJ
    Sumegi, J
    [J]. SCIENCE, 1998, 280 (5370) : 1753 - 1757
  • [10] USH2A Gene Editing Using the CRISPR System
    Fuster-Garcia, Carla
    Garcia-Garcia, Gema
    Gonzalez-Romero, Elisa
    Jaijo, Teresa
    Sequedo, Maria D.
    Ayuso, Carmen
    Vazquez-Manrique, Rafael P.
    Millan, Jose M.
    Aller, Elena
    [J]. MOLECULAR THERAPY-NUCLEIC ACIDS, 2017, 8 : 529 - 541