Puniceicoccus vermicola gen. nov., sp nov., a novel marine bacterium, and description of Puniceicoccaceae fam. nov., Puniceicoccales ord. nov., Opitutaceae fam. nov., Opitutales ord. nov and Opitutae classis nov in the phylum 'Verrucomicrobia'

被引:89
作者
Choo, Yoe-Jin [1 ]
Lee, Kiyoung [1 ]
Song, Jaeho [1 ]
Cho, Jang-Cheon [1 ]
机构
[1] Inha Univ, Div Biol & Ocean Sci, Inchon 402751, South Korea
关键词
D O I
10.1099/ijs.0.64616-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-negative, chemoheterotrophic, facultatively anaerobic coccus, designated IMCC1545(T), was isolated from the digestive tract of a marine clamworm, Periserrula leucophryna, inhabiting a tidal flat of the Yellow Sea. Cells of strain IMCC1545T are non-motile, dividing by binary fission. The predominant fatty acids are anteiSO-C-15:0 and C-18:0. The respiratory quinone is menaquinone-7 and the DNA G + C content is 52.1 mol%. Phylogenetic analyses based on 16S rRNA gene sequences using three treeing algorithms revealed that the strain formed a novel genus-level lineage within the phylum 'Verrucomicrobia'. The most closely related named organisms to strain IMCC1545(T) are 'Fucophilus fucoidanolyticus' SI-1234 (86.5% 16S rRNA gene sequence similarity), Alterococcus agarolyticus ADT3(T) (81.8%) and Opitutus terrae PB90-1(T) (80.3%), which belong to subdivision 4 of the 'Verrucomicrobia'. Subdivision 4 of the 'Verrucomicrobia' (here named Opitutae classis nov.) was divided into two clades, a clade containing strain IMCC1545(T) and a clade containing Opitutus terrae. From the taxonomic data obtained in this study, it is proposed that the new marine isolate be placed into a novel genus and species named Funiceicoccus vermicola gen. nov., sp. nov. (the type strain of Puniceicoccus vermicola is IMCC1545(T) =KCCM 42343(T) = NBRC 101964(T)) within Puniceicoccaceae fam. nov and Funiceicoccales ord. nov in the class Opitutae. The family Opitutaceae fam. nov. and order Opitutales ord. nov. are also formally proposed.
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页码:532 / 537
页数:6
相关论文
共 19 条
[1]  
Chin KJ, 1999, APPL ENVIRON MICROB, V65, P5042
[2]   Opitutus terrae gen nov, sp nov, to accommodate novel strains of the division 'Verrucomicrobia' isolated from rice paddy soil [J].
Chin, KJ ;
Liesack, W ;
Janssen, PH .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 :1965-1968
[3]   Lentisphaera araneosa gen. nov., sp nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae [J].
Cho, JC ;
Vergin, KL ;
Morris, RM ;
Giovannoni, SJ .
ENVIRONMENTAL MICROBIOLOGY, 2004, 6 (06) :611-621
[4]   Parvularcula bermudensis gen. nov., sp nov., a marine bacterium that forms a deep branch in the α-Proteobacteria [J].
Cho, JC ;
Giovannoni, SJ .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2003, 53 :1031-1036
[5]   Akkermansia muciniphila gen. nov., sp nov., a human intestinal mucin-degrading bacterium [J].
Derrien, M ;
Vaughan, EE ;
Plugge, CM ;
de Vos, WM .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2004, 54 :1469-1476
[6]  
Garrity GM, 2003, TAXONOMIC OUTLINE PR
[7]   Effect of humic material on the bacterioplankton community composition in boreal lakes and mesocosms [J].
Haukka, K ;
Heikkinen, E ;
Kairesalo, T ;
Karjalainen, H ;
Sivonen, K .
ENVIRONMENTAL MICROBIOLOGY, 2005, 7 (05) :620-630
[8]   Phylogeny of Prosthecobacter, the fusiform caulobacters: Members of a recently discovered division of the Bacteria [J].
Hedlund, BP ;
Gosink, JJ ;
Staley, JT .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1996, 46 (04) :960-966
[9]   Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity [J].
Hugenholtz, P ;
Goebel, BM ;
Pace, NR .
JOURNAL OF BACTERIOLOGY, 1998, 180 (18) :4765-4774
[10]   Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil [J].
Janssen, PH ;
Schuhmann, A ;
Morschel, E ;
Rainey, FA .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1997, 63 (04) :1382-1388