Design and performance characterization of electronic structure calculations on massively parallel supercomputers: a case study of GPAW on the Blue Gene/P architecture

被引:2
|
作者
Romero, N. A. [1 ]
Glinsvad, C. [2 ]
Larsen, A. H. [3 ,4 ,5 ,6 ]
Enkovaara, J. [7 ,8 ]
Shende, S. [9 ]
Morozov, V. A. [1 ]
Mortensen, J. J. [3 ]
机构
[1] Argonne Natl Lab, Leadership Comp Facil, Argonne, IL 60439 USA
[2] Tech Univ Denmark, Dept Phys, Ctr Individual Nanoparticle Funct, DK-2800 Lyngby, Denmark
[3] Tech Univ Denmark, Dept Phys, Ctr Atom Scale Mat Design, DK-2800 Lyngby, Denmark
[4] Univ Basque Country, CSIC UPV EHU MPC, Nanobio Spect Grp, E-20018 San Sebastian, Spain
[5] Univ Basque Country, CSIC UPV EHU MPC, ETSF Sci Dev Ctr, Dept Fis Mat, E-20018 San Sebastian, Spain
[6] DIPC, E-20018 San Sebastian, Spain
[7] CSC IT Ctr Sci Ltd, FI-02101 Espoo, Finland
[8] Aalto Univ, Sch Sci, Dept Appl Phys, FI-00076 Aalto, Finland
[9] Univ Oregon, Performance Res Lab, Eugene, OR 97403 USA
来源
基金
芬兰科学院; 欧洲研究理事会; 美国国家科学基金会;
关键词
GPAW; electronic structure; DFT; blue gene; massive parallelization; high-performance computing; TOTAL-ENERGY CALCULATIONS; MOLECULAR-DYNAMICS;
D O I
10.1002/cpe.3199
中图分类号
TP31 [计算机软件];
学科分类号
081202 ; 0835 ;
摘要
Density function theory (DFT) is the most widely employed electronic structure method because of its favorable scaling with system size and accuracy for a broad range of molecular and condensed-phase systems. The advent of massively parallel supercomputers has enhanced the scientific community's ability to study larger system sizes. Ground-state DFT calculations on similar to 10(3) valence electrons using traditional O (N-3) algorithms can be routinely performed on present-day supercomputers. The performance characteristics of these massively parallel DFT codes on > 10(4) computer cores are not well understood. The GPAW code was ported an optimized for the Blue Gene/P architecture. We present our algorithmic parallelization strategy and interpret the results for a number of benchmark test cases. Copyright (C) 2013 John Wiley & Sons, Ltd.
引用
收藏
页码:69 / 93
页数:25
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