Predictive Modeling of Non-Viral Gene Transfer

被引:44
作者
Schwake, Gerlinde [1 ]
Youssef, Simon [1 ,2 ]
Kuhr, Jan-Timm [1 ,2 ,3 ]
Gude, Sebastian [1 ]
David, Maria Pamela [1 ]
Mendoza, Eduardo [1 ,2 ,4 ]
Frey, Erwin [1 ,2 ,3 ]
Raedler, Joachim O. [1 ,2 ]
机构
[1] Univ Munich, Fak Phys, D-80539 Munich, Germany
[2] CeNS, D-80539 Munich, Germany
[3] Arnold Sommerfeld Ctr Theoret Phys, D-80539 Munich, Germany
[4] Univ Philippines, Inst Math, Quezon City 1101, Philippines
关键词
mathematical modeling; gene transfer; single cell; transfection/gene expression; QUANTITATIVE-ANALYSIS; DNA DELIVERY; EXPRESSION; POLYETHYLENIMINE; VECTORS; CELLS; MECHANISMS; COMPLEXES; TRANSPORT; INSIGHTS;
D O I
10.1002/bit.22604
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
In non-viral gene delivery, the variance of transgenic expression sterns from the low number of plasmids successfully transferred. Here, we experimentally determine Lipofectamine- and PEI-mediated exogenous gene expression distributions from single cell time-lapse analysis. Broad Poisson-like distributions of steady state expression are observed for both transfection agents, when used with synchronized cell lines. At the same time, co-transfection analysis with YFP- and CFP-coding plasmids shows that multiple plasmids are simultaneously expressed, suggesting that plasmids are delivered in correlated units (complexes). We present a mathematical model of transfection, where a stochastic, two-step process is assumed, with the first being the low-probability entry step of complexes into the nucleus, followed by the subsequent release and activation of a small number of plasmids from a delivered complex. This conceptually simple model consistently predicts the observed fraction of transfected cells, the cotransfection ratio and the expression level distribution. It yields the number of efficient plasmids per complex and elucidates the origin of the associated noise, consequently providing a platform for evaluating and improving non-viral vectors. Biotechnol. Bioeng, 2010; 105: 805-813. (C) 2009 Wiley Periodicals, Inc.
引用
收藏
页码:805 / 813
页数:9
相关论文
共 42 条
[1]   Noise in eukaryotic gene expression [J].
Blake, WJ ;
Kærn, M ;
Cantor, CR ;
Collins, JJ .
NATURE, 2003, 422 (6932) :633-637
[2]   A VERSATILE VECTOR FOR GENE AND OLIGONUCLEOTIDE TRANSFER INTO CELLS IN CULTURE AND IN-VIVO - POLYETHYLENIMINE [J].
BOUSSIF, O ;
LEZOUALCH, F ;
ZANTA, MA ;
MERGNY, MD ;
SCHERMAN, D ;
DEMENEIX, B ;
BEHR, JP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (16) :7297-7301
[3]   Cell cycle dependence of gene transfer by lipoplex polyplex and recombinant adenovirus [J].
Brunner, S ;
Sauer, T ;
Carotta, S ;
Cotten, M ;
Saltik, M ;
Wagner, E .
GENE THERAPY, 2000, 7 (05) :401-407
[4]   Cellular dynamics of EGF receptor-targeted synthetic viruses [J].
de Bruin, Karla ;
Ruthardt, Nadia ;
von Gersdorff, Katharina ;
Bausinger, Ralf ;
Wagner, Ernst ;
Ogris, Manfred ;
Braeuchle, Christoph .
MOLECULAR THERAPY, 2007, 15 (07) :1297-1305
[5]   Structural investigations of DNA-polycation complexes [J].
DeRouchey, J ;
Netz, RR ;
Rädler, JO .
EUROPEAN PHYSICAL JOURNAL E, 2005, 16 (01) :17-28
[6]   Understanding intracellular transport processes pertinent to synthetic gene delivery via stochastic simulations and sensitivity analyses [J].
Dinh, Anh-Tuan ;
Pangarkar, Chinmay ;
Theofanous, Theo ;
Mitragotri, Samir .
BIOPHYSICAL JOURNAL, 2007, 92 (03) :831-846
[8]   Stochastic gene expression in a single cell [J].
Elowitz, MB ;
Levine, AJ ;
Siggia, ED ;
Swain, PS .
SCIENCE, 2002, 297 (5584) :1183-1186
[9]   Gene therapy: Safer and virus-free? [J].
Ferber, D .
SCIENCE, 2001, 294 (5547) :1638-1642
[10]   Probability in transcriptional regulation and its implications for leukocyte differentiation and inducible gene expression [J].
Hume, DA .
BLOOD, 2000, 96 (07) :2323-2328