The Alter Retina: Alternative Splicing of Retinal Genes in Health and Disease

被引:20
作者
Aisa-Marin, Izarbe [1 ,2 ]
Garcia-Arroyo, Rocio [1 ,3 ]
Mirra, Serena [1 ,2 ]
Marfany, Gemma [1 ,2 ,3 ]
机构
[1] Univ Barcelona, Dept Genet Microbiol & Stat, Avda Diagonal 643, Barcelona 08028, Spain
[2] Univ Barcelona, Inst Salud Carlos III ISCIII, Ctr Invest Biomed Red Enfermedades Raras CIBERER, Barcelona 08028, Spain
[3] Univ Barcelona, Inst Biomed, IBUB IRSJD, Barcelona 08028, Spain
关键词
retina; alternative splicing; inherited retinal dystrophies; splicing factors; non-canonical splice site variants; deep intronic variants; microexons;
D O I
10.3390/ijms22041855
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Alternative splicing of mRNA is an essential mechanism to regulate and increase the diversity of the transcriptome and proteome. Alternative splicing frequently occurs in a tissue- or time-specific manner, contributing to differential gene expression between cell types during development. Neural tissues present extremely complex splicing programs and display the highest number of alternative splicing events. As an extension of the central nervous system, the retina constitutes an excellent system to illustrate the high diversity of neural transcripts. The retina expresses retinal specific splicing factors and produces a large number of alternative transcripts, including exclusive tissue-specific exons, which require an exquisite regulation. In fact, a current challenge in the genetic diagnosis of inherited retinal diseases stems from the lack of information regarding alternative splicing of retinal genes, as a considerable percentage of mutations alter splicing or the relative production of alternative transcripts. Modulation of alternative splicing in the retina is also instrumental in the design of novel therapeutic approaches for retinal dystrophies, since it enables precision medicine for specific mutations.
引用
收藏
页码:1 / 28
页数:29
相关论文
共 140 条
[1]   Splicing mutations in human genetic disorders: examples, detection, and confirmation [J].
Abramowicz, Anna ;
Gos, Monika .
JOURNAL OF APPLIED GENETICS, 2018, 59 (03) :253-268
[2]   Nr2e3 functional domain ablation by CRISPR-Cas9D10A identifies a new isoform and generates retinitis pigmentosa and enhanced S-cone syndrome models [J].
Aisa-Marin, Izarbe ;
Jose Lopez-Iniesta, M. ;
Milla, Santiago ;
Lillo, Jaume ;
Navarro, Gemma ;
de la Villa, Pedro ;
Marfany, Gemma .
NEUROBIOLOGY OF DISEASE, 2020, 146
[3]   Identification and Rescue of Splice Defects Caused by Two Neighboring Deep-Intronic ABCA4 Mutations Underlying Stargardt Disease [J].
Albert, Silvia ;
Garanto, Alejandro ;
Sangermano, Riccardo ;
Khan, Mubeen ;
Bax, Nathalie M. ;
Hoyng, Carel B. ;
Zernant, Jana ;
Lee, Winston ;
Allikmets, Rando ;
Collin, Rob W. J. ;
Cremers, Frans P. M. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2018, 102 (04) :517-527
[4]   Dystrophin Dp71 Isoforms Are Differentially Expressed in the Mouse Brain and Retina: Report of New Alternative Splicing and a Novel Nomenclature for Dp71 Isoforms [J].
Aragon, Jorge ;
Gonzalez-Reyes, Mayram ;
Romo-Yanez, Jose ;
Vacca, Ophelie ;
Aguilar-Gonzalez, Guadalupe ;
Rendon, Alvaro ;
Vaillend, Cyrille ;
Montanez, Cecilia .
MOLECULAR NEUROBIOLOGY, 2018, 55 (02) :1376-1386
[5]   Reduction of choroidal neovascularization in mice by adeno-associated virus-delivered anti-vascular endothelial growth factor short hairpin RNA [J].
Askou, Anne Louise ;
Pournaras, Jean-Antoine C. ;
Pihlmann, Maria ;
Svalgaard, Jesper D. ;
Arsenijevic, Yvan ;
Kostic, Corinne ;
Bek, Toke ;
Dagnaes-Hansen, Frederik ;
Mikkelsen, Jacob Giehm ;
Jensen, Thomas Gryesten ;
Corydon, Thomas J. .
JOURNAL OF GENE MEDICINE, 2012, 14 (11) :632-641
[6]   The molecular and cellular basis of rhodopsin retinitis pigmentosa reveals potential strategies for therapy [J].
Athanasiou, Dimitra ;
Aguila, Monica ;
Bellingham, James ;
Li, Wenwen ;
McCulley, Caroline ;
Reeves, Philip J. ;
Cheetham, Michael E. .
PROGRESS IN RETINAL AND EYE RESEARCH, 2018, 62 :1-23
[7]   An Unusual Retinal Phenotype Associated With a Novel Mutation in RHO [J].
Audo, Isabelle ;
Friedrich, Anne ;
Mohand-Said, Saddek ;
Lancelot, Marie-Elise ;
Antonio, Aline ;
Moskova-Doumanova, Veselina ;
Poch, Olivier ;
Bhattacharya, Shomi ;
Sahel, Jose-Alain ;
Zeitz, Christina .
ARCHIVES OF OPHTHALMOLOGY, 2010, 128 (08) :1036-1045
[8]   Alternative splicing as a regulator of development and tissue identity [J].
Baralle, Francisco E. ;
Giudice, Jimena .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2017, 18 (07) :437-451
[9]  
Bayega A, 2018, METHODS MOL BIOL, V1783, P121, DOI 10.1007/978-1-4939-7834-2_6
[10]   Repair of Rhodopsin mRNA by Spliceosome-Mediated RNA Trans-Splicing: A New Approach for Autosomal Dominant Retinitis Pigmentosa [J].
Berger, Adeline ;
Lorain, Stephanie ;
Josephine, Charlene ;
Desrosiers, Melissa ;
Peccate, Cecile ;
Voit, Thomas ;
Garcia, Luis ;
Sahel, Jose-Alain ;
Bemelmans, Alexis-Pierre .
MOLECULAR THERAPY, 2015, 23 (05) :918-930