chemical biology;
chromatin;
epigenetics;
chemical tools;
PROTEOLYSIS-TARGETING CHIMERAS;
CELL-FREE DNA;
HISTONE DEACETYLASE;
5-HYDROXYMETHYLCYTOSINE SIGNATURES;
PROTEIN INTERACTIONS;
PROTEOMICS APPROACH;
ENGINEERED ENZYMES;
PHASE-SEPARATION;
GENE-EXPRESSION;
HOLE APPROACH;
D O I:
10.1146/annurev-biochem-080120-021109
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
The field of epigenetics has exploded over the last two decades, revealing an astonishing level of complexity in the way genetic information is stored and accessed in eukaryotes. This expansion of knowledge, which is very much ongoing, has been made possible by the availability of evermore sensitive and precise molecular tools. This review focuses on the increasingly important role that chemistry plays in this burgeoning field. In an effort to make these contributions more accessible to the nonspecialist, we group available chemical approaches into those that allow the covalent structure of the protein and DNA components of chromatin to be manipulated, those that allow the activity of myriad factors that act on chromatin to be controlled, and those that allow the covalent structure and folding of chromatin to be characterized. The application of these tools is illustrated through a series of case studies that highlight how the molecular precision afforded by chemistry is being used to establish causal biochemical relationships at the heart of epigenetic regulation.
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Anders, Lars
;
Guenther, Matthew G.
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Guenther, Matthew G.
;
Qi, Jun
论文数: 0引用数: 0
h-index: 0
机构:
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Qi, Jun
;
Fan, Zi Peng
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
MIT, Computat & Syst Biol Program, Cambridge, MA 02139 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Fan, Zi Peng
;
Marineau, Jason J.
论文数: 0引用数: 0
h-index: 0
机构:
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Marineau, Jason J.
;
Rahl, Peter B.
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Rahl, Peter B.
;
Loven, Jakob
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Loven, Jakob
;
Sigova, Alla A.
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Sigova, Alla A.
;
Smith, William B.
论文数: 0引用数: 0
h-index: 0
机构:
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Smith, William B.
;
Lee, Tong Ihn
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Lee, Tong Ihn
;
Bradner, James E.
论文数: 0引用数: 0
h-index: 0
机构:
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA USA
Harvard Univ, Sch Med, Dept Med, Cambridge, MA 02138 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Bradner, James E.
;
Young, Richard A.
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
MIT, Dept Biol, Cambridge, MA USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
机构:
Univ N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Anderson, Cathy J.
;
Baird, Matthew R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ N Carolina, Eshelman Sch Pharm, Div Chem Biol & Med Chem, Chapel Hill, NC 27599 USA
Harvard Med Sch, Dept Cell Biol, Boston, MA 02115 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Baird, Matthew R.
;
Hsu, Allen
论文数: 0引用数: 0
h-index: 0
机构:
NIEHS, Genome Integr & Struct Biol Lab, NIH, Dept Hlth & Human Serv, Res Triangle Pk, NC 27709 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Hsu, Allen
;
Barbour, Emily H.
论文数: 0引用数: 0
h-index: 0
机构:
Univ N Carolina, Eshelman Sch Pharm, Div Chem Biol & Med Chem, Chapel Hill, NC 27599 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Barbour, Emily H.
;
Koyama, Yuka
论文数: 0引用数: 0
h-index: 0
机构:
Univ N Carolina, Eshelman Sch Pharm, Div Chem Biol & Med Chem, Chapel Hill, NC 27599 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Koyama, Yuka
;
Borgnia, Mario J.
论文数: 0引用数: 0
h-index: 0
机构:
NIEHS, Genome Integr & Struct Biol Lab, NIH, Dept Hlth & Human Serv, Res Triangle Pk, NC 27709 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Borgnia, Mario J.
;
McGinty, Robert K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ N Carolina, Eshelman Sch Pharm, Div Chem Biol & Med Chem, Chapel Hill, NC 27599 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Anders, Lars
;
Guenther, Matthew G.
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Guenther, Matthew G.
;
Qi, Jun
论文数: 0引用数: 0
h-index: 0
机构:
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Qi, Jun
;
Fan, Zi Peng
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
MIT, Computat & Syst Biol Program, Cambridge, MA 02139 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Fan, Zi Peng
;
Marineau, Jason J.
论文数: 0引用数: 0
h-index: 0
机构:
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Marineau, Jason J.
;
Rahl, Peter B.
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Rahl, Peter B.
;
Loven, Jakob
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Loven, Jakob
;
Sigova, Alla A.
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Sigova, Alla A.
;
Smith, William B.
论文数: 0引用数: 0
h-index: 0
机构:
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Smith, William B.
;
Lee, Tong Ihn
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Lee, Tong Ihn
;
Bradner, James E.
论文数: 0引用数: 0
h-index: 0
机构:
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA USA
Harvard Univ, Sch Med, Dept Med, Cambridge, MA 02138 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Bradner, James E.
;
Young, Richard A.
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
MIT, Dept Biol, Cambridge, MA USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
机构:
Univ N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Anderson, Cathy J.
;
Baird, Matthew R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ N Carolina, Eshelman Sch Pharm, Div Chem Biol & Med Chem, Chapel Hill, NC 27599 USA
Harvard Med Sch, Dept Cell Biol, Boston, MA 02115 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Baird, Matthew R.
;
Hsu, Allen
论文数: 0引用数: 0
h-index: 0
机构:
NIEHS, Genome Integr & Struct Biol Lab, NIH, Dept Hlth & Human Serv, Res Triangle Pk, NC 27709 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Hsu, Allen
;
Barbour, Emily H.
论文数: 0引用数: 0
h-index: 0
机构:
Univ N Carolina, Eshelman Sch Pharm, Div Chem Biol & Med Chem, Chapel Hill, NC 27599 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Barbour, Emily H.
;
Koyama, Yuka
论文数: 0引用数: 0
h-index: 0
机构:
Univ N Carolina, Eshelman Sch Pharm, Div Chem Biol & Med Chem, Chapel Hill, NC 27599 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Koyama, Yuka
;
Borgnia, Mario J.
论文数: 0引用数: 0
h-index: 0
机构:
NIEHS, Genome Integr & Struct Biol Lab, NIH, Dept Hlth & Human Serv, Res Triangle Pk, NC 27709 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
Borgnia, Mario J.
;
McGinty, Robert K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ N Carolina, Eshelman Sch Pharm, Div Chem Biol & Med Chem, Chapel Hill, NC 27599 USAUniv N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA