Next-Generation Sequencing in Newborn Screening: A Review of Current State

被引:55
作者
Remec, Ziga I. [1 ]
Trebusak Podkrajsek, Katarina [1 ,2 ]
Repic Lampret, Barbka [1 ]
Kovac, Jernej [1 ]
Groselj, Urh [3 ,4 ]
Tesovnik, Tine [1 ]
Battelino, Tadej [3 ,4 ]
Debeljak, Marusa [1 ,2 ]
机构
[1] Univ Childrens Hosp, Univ Med Ctr Ljubljana, Clin Inst Special Lab Diagnost, Ljubljana, Slovenia
[2] Univ Ljubljana, Inst Biochem & Mol Genet, Fac Med, Ljubljana, Slovenia
[3] Univ Childrens Hosp, Univ Med Ctr Ljubljana, Dept Endocrinol Diabet & Metab Dis, Ljubljana, Slovenia
[4] Univ Ljubljana, Fac Med, Chair Pediat, Ljubljana, Slovenia
关键词
newborn screening; NBS; neonatal screening; next generation sequencing; NGS; expanded NBS program; DNA sequencing; high-throughput sequencing; TANDEM MASS-SPECTROMETRY; FAMILIAL HYPERCHOLESTEROLEMIA; CYSTIC-FIBROSIS; SECONDARY FINDINGS; CLINICAL EXOME; CHILDREN; RECOMMENDATIONS; GUIDELINES; PROGRAM; BENEFIT;
D O I
10.3389/fgene.2021.662254
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Newborn screening was first introduced at the beginning of the 1960s with the successful implementation of the first phenylketonuria screening programs. Early expansion of the included disorders was slow because each additional disorder screened required a separate test. Subsequently, the technological advancements of biochemical methodology enabled the scaling-up of newborn screening, most notably with the implementation of tandem mass spectrometry. In recent years, we have witnessed a remarkable progression of high-throughput sequencing technologies, which has resulted in a continuous decrease of both cost and time required for genetic analysis. This has enabled more widespread use of the massive multiparallel sequencing. Genomic sequencing is now frequently used in clinical applications, and its implementation in newborn screening has been intensively advocated. The expansion of newborn screening has raised many clinical, ethical, legal, psychological, sociological, and technological concerns over time. This review provides an overview of the current state of next-generation sequencing regarding newborn screening including current recommendations and potential challenges for the use of such technologies in newborn screening.
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页数:11
相关论文
共 112 条
[51]   Cascade Screening for Familial Hypercholesterolemia and the Use of Genetic Testing [J].
Knowles, Joshua W. ;
Rader, Daniel J. ;
Khoury, Muin J. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2017, 318 (04) :381-382
[52]  
Kroos M, 2012, AM J MED GENET C, V160C, P59, DOI [10.1002/ajmc.31318, 10.1002/ajmg.c.31318]
[53]   Pharmacogenomics education in medical and pharmacy schools: conclusions of a global survey [J].
Kuzelicki, Natasa Karas ;
Zitnik, Irena Prodan ;
Gurwitz, David ;
Llerena, Adrian ;
Cascorbi, Ingolf ;
Siest, Sofia ;
Simmaco, Maurizio ;
Ansari, Marc ;
Pazzagli, Mario ;
Di Resta, Chiara ;
Brandslund, Ivan ;
Schwab, Matthias ;
Vermeersch, Pieter ;
Lunshof, Jeantine E. ;
Dedoussis, George ;
Flordellis, Christodoulos S. ;
Fuhr, Uwe ;
Stingl, Julia C. ;
van Schaik, Ron H. N. ;
Manolopoulos, Vangelis G. ;
Marc, Janja .
PHARMACOGENOMICS, 2019, 20 (09) :643-657
[54]   EXPANDED NEWBORN SCREENING PROGRAM IN SLOVENIA USING TANDEM MASS SPECTROMETRY AND CONFIRMATORY NEXT GENERATION SEQUENCING GENETIC TESTING [J].
Lampret, Barbka Repic ;
Remec, Ziga Iztok ;
Torkar, Ana Drole ;
Tansek, Mojca Zerjav ;
Smon, Andraz ;
Koracin, Vanesa ;
Cuk, Vanja ;
Perko, Dasa ;
Ulaga, Blanka ;
Jelovsek, Ana Marija ;
Debeljak, Marusa ;
Kovac, Jernej ;
Battelino, Tadej ;
Groselj, Urh .
ZDRAVSTVENO VARSTVO, 2020, 59 (04) :256-263
[55]   Ethical and Psychosocial Issues in Whole Genome Sequencing (WGS) for Newborns [J].
Lantos, John D. .
PEDIATRICS, 2019, 143 :S1-S5
[56]   Newborn screening: the genomic challenge [J].
Levy, Harvey L. .
MOLECULAR GENETICS & GENOMIC MEDICINE, 2014, 2 (02) :81-84
[57]  
Levy HL, 1998, CLIN CHEM, V44, P2401
[58]   Advancements in Next-Generation Sequencing [J].
Levy, Shawn E. ;
Myers, Richard M. .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 17, 2016, 17 :95-115
[59]  
Liehr T., 2017, What About the Real Costs of Next Generation Sequencing (NGS) in Human Genetic Diagnostics?
[60]   Regarding the rights and duties of Clinical Laboratory Geneticists in genetic healthcare systems; results of a survey in over 50 countries [J].
Liehr, Thomas ;
Carreira, Isabel M. ;
Balogh, Zsofia ;
Dominguez Garrido, Elena ;
Verdorfer, Irmgard ;
Coviello, Domenico A. ;
Florentin, Lina ;
Scheffer, Hans ;
Rincic, Martina ;
Williams, Heather E. .
EUROPEAN JOURNAL OF HUMAN GENETICS, 2019, 27 (08) :1168-1174