Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer

被引:79
作者
Couch, Fergus J. [1 ,2 ]
Kuchenbaecker, Karoline B. [3 ]
Michailidou, Kyriaki [3 ]
Mendoza-Fandino, Gustavo A. [4 ]
Nord, Silje [5 ]
Lilyquist, Janna [2 ]
Olswold, Curtis [2 ]
Hallberg, Emily [2 ]
Agata, Simona [6 ]
Ahsan, Habibul [7 ,8 ,9 ]
Aittomaeki, Kristiina [10 ]
Ambrosone, Christine [11 ]
Andrulis, Irene L. [12 ,13 ,14 ]
Anton-Culver, Hoda [15 ]
Arndt, Volker [16 ]
Arun, Banu K. [17 ]
Arver, Brita [18 ]
Barile, Monica [19 ]
Barkardottir, Rosa B. [20 ,21 ]
Barrowdale, Daniel [3 ]
Beckmann, Lars [22 ]
Beckmann, Matthias W. [23 ]
Benitez, Javier [24 ,25 ,26 ]
Blank, Stephanie V. [27 ]
Blomqvist, Carl [28 ,29 ]
Bogdanova, Natalia V. [30 ]
Bojesen, Stig E. [31 ]
Bolla, Manjeet K. [3 ]
Bonanni, Bernardo [19 ]
Brauch, Hiltrud [32 ,33 ]
Brenner, Hermann [16 ,34 ,35 ]
Burwinkel, Barbara [36 ]
Buys, Saundra S. [37 ]
Caldes, Trinidad [38 ]
Caligo, Maria A. [39 ,40 ]
Canzian, Federico [41 ]
Carpenter, Jane [42 ]
Chang-Claude, Jenny [43 ]
Chanock, Stephen J. [44 ]
Chung, Wendy K. [45 ,46 ]
Claes, Kathleen B. M. [47 ]
Cox, Angela [48 ]
Cross, Simon S. [49 ]
Cunningham, Julie M. [1 ]
Czene, Kamila [50 ]
Daly, Mary B. [51 ]
Damiola, Francesca [52 ]
Darabi, Hatef [50 ]
de la Hoya, Miguel [38 ]
Devilee, Peter [53 ]
机构
[1] Mayo Clin, Dept Lab Med & Pathol, Rochester, MN 55905 USA
[2] Mayo Clin, Dept Hlth Sci Res, Rochester, MN 55905 USA
[3] Univ Cambridge, Dept Publ Hlth & Primary Care, Ctr Canc Genet Epidemiol, Cambridge CB1 8RN, England
[4] Univ S Florida, Coll Med, H Lee Moffitt Canc Ctr & Res Inst, Canc Epidemiol Program, Tampa, FL 33612 USA
[5] Radiumhosp, Oslo Univ Hosp, Inst Canc Res, Dept Genet, N-0310 Oslo, Norway
[6] IRCCS, IOV, Immunol & Mol Oncol Unit, I-20133 Padua, Italy
[7] Univ Chicago, Dept Hlth Studies, Chicago, IL 60637 USA
[8] Univ Chicago, Ctr Comprehens Canc, Chicago, IL 60637 USA
[9] Univ Chicago, Dept Med & Human Genet, Chicago, IL 60637 USA
[10] Univ Helsinki, Cent Hosp, Dept Clin Genet, Helsinki 00029, Finland
[11] Roswell Pk Canc Inst, Dept Canc Prevent & Control, Buffalo, NY 14263 USA
[12] Mt Sinai Hosp, Lunenfeld Tanenbaum Res Inst, Toronto, ON M5G 1X5, Canada
[13] Univ Toronto, Dept Mol Genet, Toronto, ON M5B 1W8, Canada
[14] Univ Toronto, Dept Lab Med & Pathobiol, Toronto, ON M5B 1W8, Canada
[15] Univ Calif Irvine, Dept Epidemiol, Irvine, CA 92697 USA
[16] German Canc Res Ctr, Div Clin Epidemiol & Aging Res, D-69120 Heidelberg, Germany
[17] Univ Texas MD Anderson Canc Ctr, Houston, TX 77030 USA
[18] Karolinska Univ Hosp, Dept Oncol, SE-17176 Stockholm, Sweden
[19] Ist Europeo Oncol, Div Canc Prevent & Genet, I-20141 Milan, Italy
[20] Landspitali Univ Hosp, Dept Pathol, IS-101 Reykjavik, Iceland
[21] Univ Iceland, Sch Med, IS-101 Reykjavik, Iceland
[22] Inst Qual & Efficiency Hlth Care IQWiG, D-50670 Cologne, Germany
[23] Univ Erlangen Nurnberg, Comprehens Canc Ctr Erlangen EMN, Univ Breast Ctr Franconia, Dept Gynecol & Obstet,Univ Hosp Erlangen, D-91054 Erlangen, Germany
[24] Spanish Natl Canc Ctr CNIO, Human Genet Grp, Human Canc Genet Program, Madrid 28029, Spain
[25] Spanish Natl Canc Ctr CNIO, Human Canc Genet Program, Genotyping Unit CeGen, Madrid 28029, Spain
[26] Biomed Network Rare Dis CIBERER, Madrid 28029, Spain
[27] NYU, Sch Med, NYU Womens Canc Program, New York, NY 10016 USA
[28] Univ Helsinki, Dept Oncol, FI-00029 Helsinki, Finland
[29] Univ Helsinki, Cent Hosp, FI-00029 Helsinki, Finland
[30] Hannover Med Sch, Dept Radiat Oncol, D-30625 Hannover, Germany
[31] Copenhagen Univ Hosp, Herlev Hosp, Copenhagen Gen Populat Study, DK-2730 Herlev, Denmark
[32] Dr Margarete Fischer Bosch Inst Clin Pharmacol, D-70376 Stuttgart, Germany
[33] Univ Tubingen, D-72074 Tubingen, Germany
[34] German Canc Res Ctr, Div Prevent Oncol, D-69120 Heidelberg, Germany
[35] Natl Ctr Tumor Dis NCT, D-69120 Heidelberg, Germany
[36] Heidelberg Univ, Dept Obstet & Gynecol, D-69120 Heidelberg, Germany
[37] Univ Utah, Sch Med, Dept Med, Huntsman Canc Inst, Salt Lake City, UT 84112 USA
[38] IdISSC, Hosp Clin San Carlos, Mol Oncol Lab, Madrid 28040, Spain
[39] Univ Pisa, Dept Lab Med, Sect Genet Oncol, I-56126 Pisa, Italy
[40] Univ Hosp Pisa, I-56126 Pisa, Italy
[41] German Canc Res Ctr, Genom Epidemiol Grp, D-69120 Heidelberg, Germany
[42] Univ Sydney, Westmead Millennium Inst, Australian Breast Canc Tissue Bank, Sydney, NSW 2145, Australia
[43] German Canc Res Ctr, Div Canc Epidemiol, D-69120 Heidelberg, Germany
[44] NCI, Div Canc Epidemiol & Genet, Rockville, MD 20850 USA
[45] Columbia Univ, Dept Pediat, New York, NY 10032 USA
[46] Columbia Univ, Dept Med, New York, NY 10032 USA
[47] Univ Ghent, Ctr Med Genet, B-9000 Ghent, Belgium
[48] Univ Sheffield, Dept Oncol, Sheffield Canc Res Ctr, Sheffield S10 2RX, S Yorkshire, England
[49] Univ Sheffield, Acad Unit Pathol, Dept Neurosci, Sheffield S10 2HQ, S Yorkshire, England
[50] Karolinska Inst, Dept Med Epidemiol & Biostat, SE-17177 Stockholm, Sweden
基金
美国国家卫生研究院; 加拿大健康研究院;
关键词
GENOME-WIDE ASSOCIATION; BRCA2 MUTATION CARRIERS; GENE-EXPRESSION; COMMON VARIANTS; TELOMERE LENGTH; RISK; IDENTIFY; INVESTIGATORS; METAANALYSIS; CONSORTIUM;
D O I
10.1038/ncomms11375
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Common variants in 94 loci have been associated with breast cancer including 15 loci with genome-wide significant associations (P<5 x 10(-8)) with oestrogen receptor (ER)-negative breast cancer and BRCA1-associated breast cancer risk. In this study, to identify new ER-negative susceptibility loci, we performed a meta-analysis of 11 genome-wide association studies (GWAS) consisting of 4,939 ER-negative cases and 14,352 controls, combined with 7,333 ER-negative cases and 42,468 controls and 15,252 BRCA1 mutation carriers genotyped on the iCOGS array. We identify four previously unidentified loci including two loci at 13q22 near KLF5, a 2p23.2 locus near WDR43 and a 2q33 locus near PPIL3 that display genome-wide significant associations with ER-negative breast cancer. In addition, 19 known breast cancer risk loci have genome-wide significant associations and 40 had moderate associations (P<0.05) with ER-negative disease. Using functional and eQTL studies we implicate TRMT61B and WDR43 at 2p23.2 and PPIL3 at 2q33 in ER-negative breast cancer aetiology. All ER-negative loci combined account for similar to 11% of familial relative risk for ER-negative disease and may contribute to improved ER-negative and BRCA1 breast cancer risk prediction.
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页数:13
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