Development of Activity-Based Proteomic Probes for Protein Citrullination

被引:9
|
作者
Nemmara, Venkatesh V. [1 ,2 ]
Thompson, Paul R. [1 ,2 ]
机构
[1] Univ Massachusetts, Sch Med, Dept Biochem & Mol Pharmacol, LRB 826,364 Plantat St, Worcester, MA 01605 USA
[2] Univ Massachusetts, Sch Med, Program Chem Biol, LRB 826,364 Plantat St, Worcester, MA 01605 USA
来源
ACTIVITY-BASED PROTEIN PROFILING | 2019年 / 420卷
关键词
ARGININE DEIMINASE 4; SCRAPIE-INFECTED MICE; PEPTIDYLARGININE DEIMINASE; PROTEIN-ARGININE-DEIMINASE-4; PAD4; STRUCTURAL BASIS; CL-AMIDINE; IN-VITRO; INHIBITION; ACID; HALOACETAMIDINE;
D O I
10.1007/82_2018_132
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Protein arginine deiminases (PADs) catalyze the post-translational deimination of peptidyl arginine to form peptidyl citrulline. This modification is increased in multiple inflammatory diseases and in certain cancers. PADs regulate a variety of signaling pathways including apoptosis, terminal differentiation, and transcriptional regulation. Activity-based protein profiling (ABPP) probes have been developed to understand the role of the PADs in vivo and to investigate the effect of protein citrullination in various pathological conditions. Furthermore, these ABPPs have been utilized as a platform for high-throughput inhibitor discovery. This review will showcase the development of ABPPs targeting the PADs. In addition, it provides a brief overview of PAD structure and function along with recent advances in PAD inhibitor development.
引用
收藏
页码:233 / 251
页数:19
相关论文
共 50 条
  • [41] Activity-Based Proteomic Identification of the S-Thiolation Targets of Ajoene in MDA-MB-231 Breast Cancer Cells
    Kusza, Daniel A.
    Hunter, Roger
    Schafer, Georgia
    Smith, Muneerah
    Katz, Arieh A.
    Kaschula, Catherine H.
    JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2022, 70 (46) : 14679 - 14692
  • [42] Functional profiling of adenylation domains in nonribosomal peptide synthetases by competitive activity-based protein profiling
    Kasai, Shota
    Konno, Sho
    Ishikawa, Fumihiro
    Kakeya, Hideaki
    CHEMICAL COMMUNICATIONS, 2015, 51 (87) : 15764 - 15767
  • [43] Target Discovery in Ralstonia solanacearum through an Activity-Based Protein Profiling Technique Based on Bioactive Oxadiazole Sulfones
    Chen, Biao
    Long, Qing-Su
    Meng, Jiao
    Zhou, Xiang
    Wu, Zhi-Bing
    Tuo, Xin-Xin
    Ding, Yue
    Zhang, Ling
    Wang, Pei-Yi
    Li, Zhong
    Yang, Song
    JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2020, 68 (08) : 2340 - 2346
  • [44] Quantitative Chemoproteomic Profiling of Targets of Au(I) Complexes by Competitive Activity-Based Protein Profiling
    Cheng, Xiu-Fen
    Wang, Nan
    Jiang, Zhongyao
    Chen, Zhenzhen
    Niu, Yaxin
    Tong, Lili
    Yu, Ting
    Tang, Bo
    BIOCONJUGATE CHEMISTRY, 2022, 33 (06) : 1131 - 1137
  • [45] A general approach for activity-based protein profiling of oxidoreductases with redox-differentiated diarylhalonium warheads
    Krammer, Leo
    Darnhofer, Barbara
    Kljajic, Marko
    Liesinger, Laura
    Schittmayer, Matthias
    Neshchadin, Dmytro
    Gescheidt, Georg
    Kollau, Alexander
    Mayer, Bernd
    Fischer, Roland C.
    Wallner, Silvia
    Macheroux, Peter
    Birner-Gruenberger, Ruth
    Breinbauer, Rolf
    CHEMICAL SCIENCE, 2025, : 6240 - 6256
  • [46] First Phosphonic-Type Inhibitors and Activity-Based Probes Specific to the O'nyong-nyong Virus Capsid Protease
    Torzyk-Jurowska, Karolina
    Lupicka-Slowik, Agnieszka
    Grzywa, Renata
    Chykunova, Yuliya
    Pyrc, Krzysztof
    Sienczyk, Marcin
    CHEMMEDCHEM, 2025,
  • [47] Profiling of MicroRNA Targets Using Activity-Based Protein Profiling: Linking Enzyme Activity to MicroRNA-185 Function
    Filip, Roxana
    Desrochers, Genevieve F.
    Lefebvre, David M.
    Reed, Alex
    Singaravelu, Ragunath
    Cravatt, Benjamin F.
    Pezacki, John Paul
    CELL CHEMICAL BIOLOGY, 2021, 28 (02): : 202 - +
  • [48] Perspective on Protein Arginine Deiminase Activity-Bicarbonate is a pH-independent regulator of citrullination
    Zhou, Yebin
    Mittereder, Nanette
    Sims, Gary P.
    FRONTIERS IN IMMUNOLOGY, 2018, 9
  • [49] Activity-based protein profiling in drug/pesticide discovery: Recent advances in target identification of antibacterial compounds
    Chen, Kunlun
    Zhang, Ling
    Ding, Yue
    Sun, Zhaoju
    Meng, Jiao
    Luo, Rongshuang
    Zhou, Xiang
    Liu, Liwei
    Yang, Song
    BIOORGANIC CHEMISTRY, 2024, 151
  • [50] Inhibitor Fingerprinting of Rhomboid Proteases by Activity-Based Protein Profiling Reveals Inhibitor Selectivity and Rhomboid Autoprocessing
    Wolf, Eliane V.
    Zeissler, Annett
    Verhelst, Steven H. L.
    ACS CHEMICAL BIOLOGY, 2015, 10 (10) : 2325 - 2333