Understanding of assembly phenomena by aromatic-aromatic interactions: Benzene dimer and the substituted systems

被引:601
|
作者
Lee, Eun Cheol
Kim, Dongwook
Jurecka, Petr
Tarakeshwar, P.
Hobza, Pavel
Kim, Kwang S.
机构
[1] Pohang Univ Sci & Technol, Dept Chem, Ctr Superfunct Mat, Pohang 790784, South Korea
[2] Acad Sci Czech Republ, Inst Organ Chem & Biochem, CR-16610 Prague 6, Czech Republic
[3] Korea Inst Adv Study, Sch Computat Sci, Seoul 130722, South Korea
来源
JOURNAL OF PHYSICAL CHEMISTRY A | 2007年 / 111卷 / 18期
关键词
D O I
10.1021/jp068635t
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Interactions involving aromatic rings are important in molecular/biomolecular assembly and engineering. As a consequence, there have been a number of investigations on dimers involving benzene or other substituted pi systems. In this Feature Article, we examine the relevance of the magnitudes of their attractive and repulsive interaction energy components in governing the geometries of several pi-pi systems. The geometries and the associated binding energies were evaluated at the complete basis set (CBS) limit of coupled cluster theory with singles, doubles, and perturbative triples excitations [CCSD(T)] using a least biased scheme for the given data set. The results for the benzene dimer indicate that the floppy T-shaped structure (center-to-center distance: 4.96 angstrom, with an axial benzene off-centered above the facial benzene) is isoenergetic in zero-point-energy (ZPE) corrected binding energy (D-0) to the displaced-stacked structure (vertical interplanar distance: 3.54 angstrom). However, the T-shaped structure is likely to be slightly more stable (D-0 approximate to 2.4-2.5 kcal/mol) if quadruple excitations are included in the coupled cluster calculations. The presence of substituents on the aromatic ring, irrespective of their electron withdrawing or donating nature, leads to an increase in the binding energy, and the displaced-stacked conformations are more stabilized than the T-shaped conformers. This explains the wide prevalence of displaced stacked structures in organic crystals. Despite that the dispersion energy is dominating, the substituent as well as the conformational effects are correlated to the electrostatic interaction. This electrostatic origin implies that the substituent effect would be reduced in polar solution, but important in apolar media, in particular, for assembling processes.
引用
收藏
页码:3446 / 3457
页数:12
相关论文
共 50 条
  • [1] Aromatic-Aromatic Interactions in Proteins: Beyond the Dimer
    Lanzarotti, Esteban
    Biekofsky, Rolf R.
    Estrin, Dario A.
    Marti, Marcelo A.
    Turjanski, Adrian G.
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2011, 51 (07) : 1623 - 1633
  • [2] Aliphatic-aromatic stacking interactions in cyclohexane-benzene are stronger than aromatic-aromatic interaction in the benzene dimer
    Ninkovic, D. B.
    Vojislavljevic-Vasilev, D. Z.
    Medakovic, V. B.
    Hall, M. B.
    Brothers, E. N.
    Zaric, S. D.
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (37) : 25791 - 25795
  • [3] Aromatic-aromatic interactions in and around α-helices
    Bhattacharyya, R
    Samanta, U
    Chakrabarti, P
    PROTEIN ENGINEERING, 2002, 15 (02): : 91 - 100
  • [4] Computational study of aromatic-aromatic interactions.
    Shipano, B
    Parker, D
    Nguyen, T
    Brooks, S
    Basu-Dutt, S
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2001, 221 : U167 - U167
  • [5] AROMATIC-AROMATIC RING INTERACTIONS TESTED IN CYCLOPHANES
    KIM, DH
    LEE, SS
    WHANG, DM
    KIM, K
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 1993, 3 (02) : 263 - 268
  • [6] Statistical thermodynamics of aromatic-aromatic interactions in aqueous solution
    Hayashi, Tomohiko
    Kinoshita, Masahiro
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (47) : 32406 - 32417
  • [7] NMR-STUDY OF AROMATIC-AROMATIC INTERACTIONS FOR BENZENE AND SOME OTHER FUNDAMENTAL AROMATIC SYSTEMS USING ALIGNMENT OF AROMATICS IN STRONG MAGNETIC-FIELD
    LAATIKAINEN, R
    RATILAINEN, J
    SEBASTIAN, R
    SANTA, H
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (44) : 11006 - 11010
  • [8] Aromatic-aromatic interactions as an intrinsic modulator of amyloid formation
    Pavlov, Artem
    Koksch, Beate
    JOURNAL OF PEPTIDE SCIENCE, 2024, 30
  • [9] Parsing of the free energy of aromatic-aromatic stacking interactions in solution
    Kostjukov, Viktor V.
    Khomytova, Nina M.
    Hernandez Santiago, Adrian A.
    Cervantes Tavera, Anna-Maria
    Salas Alvarado, Julieta
    Evstigneev, Maxim P.
    JOURNAL OF CHEMICAL THERMODYNAMICS, 2011, 43 (10): : 1424 - 1434
  • [10] AROMATIC AROMATIC INTERACTIONS - FREE-ENERGY PROFILES FOR THE BENZENE DIMER IN WATER, CHLOROFORM, AND LIQUID BENZENE
    JORGENSEN, WL
    SEVERANCE, DL
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1990, 112 (12) : 4768 - 4774