Meta-analysis of Voxel-Based Neuroimaging Studies using Seed-based d Mapping with Permutation of Subject Images (SDM-PSI)

被引:94
作者
Albajes-Eizagirre, Anton [1 ,2 ]
Solanes, Aleix [1 ,2 ]
Angel Fullana, Miquel [2 ,3 ]
Ioannidis, John P. A. [4 ,5 ,6 ,7 ]
Fusar-Poli, Paolo [8 ,9 ,10 ]
Torrent, Carla [1 ,2 ,3 ,11 ]
Sole, Brisa [1 ,2 ,3 ,11 ]
Mar Bonnin, Caterina [1 ,2 ,3 ,11 ]
Vieta, Eduard [1 ,2 ,3 ,11 ]
Mataix-Cols, David [12 ]
Radua, Joaquim [1 ,2 ,8 ,12 ]
机构
[1] Inst Invest Biomed August Pi & Sunyer IDIBAPS, Barcelona, Spain
[2] Mental Hlth Res Networking Ctr CIBERSAM, Barcelona, Spain
[3] Hosp Clin Barcelona, Inst Neurosci, Barcelona, Spain
[4] Stanford Univ, Sch Med, Dept Med, Stanford, CA 94305 USA
[5] Stanford Univ, Sch Med, Dept Hlth Res & Policy, Stanford, CA 94305 USA
[6] Stanford Univ, Sch Med, Dept Biomed Data Sci, Stanford, CA 94305 USA
[7] Stanford Univ, Sch Humanities & Sci, Dept Stat, Stanford, CA 94305 USA
[8] Kings Coll London, Inst Psychiat Psychol & Neurosci, Dept Psychosis Studies, London, England
[9] South London & Maudsley NHS Fdn Trust, OASIS Serv, London, England
[10] Univ Pavia, Dept Nervous Syst & Behav Sci, Pavia, Italy
[11] Univ Barcelona, Barcelona, Spain
[12] Karolinska Inst, Dept Clin Neurosci, Ctr Psychiat Res & Educ, Stockholm, Sweden
来源
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS | 2019年 / 153期
关键词
Neuroscience; Issue; 153; familywise error rate; functional magnetic resonance imaging (fMRI); meta-analysis; neuroimaging; permutation of subject images (PSI); seed-based d mapping (SDM); threshold-free cluster enhancement (TFCE); voxel-based morphometry (VBM); INFERENCE;
D O I
10.3791/59841
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Most methods for conducting meta-analysis of voxel-based neuroimaging studies do not assess whether effects are not null, but whether there is a convergence of peaks of statistical significance, and reduce the assessment of the evidence to a binary classification exclusively based on p-values (i.e., voxels can only be "statistically significant" or "non-statistically significant"). Here, we detail how to conduct a meta-analysis using Seed-based d Mapping with Permutation of Subject Images (SDM-PSI), a novel method that uses a standard permutation test to assess whether effects are not null. We also show how to grade the strength of the evidence according to a set of criteria that considers a range of statistical significance levels (from more liberal to more conservative), the amount of data or the detection of potential biases (e.g., small-study effect and excess of significance). To exemplify the procedure, we detail the conduction of a meta-analysis of voxel-based morphometry studies in obsessive-compulsive disorder, and we provide all the data already extracted from the manuscripts to allow the reader to replicate the meta-analysis easily. SDM-PSI can also be used for meta-analyses of functional magnetic resonance imaging, diffusion tensor imaging, position emission tomography and surface-based morphometry studies.
引用
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页数:7
相关论文
共 22 条
[11]  
Liberati A, 2009, BMJ-BRIT MED J, V339, DOI [10.1136/bmj.b2700, 10.1136/bmj.b2535, 10.1371/journal.pmed.1000097, 10.1016/j.ijsu.2010.02.007, 10.1016/j.ijsu.2010.07.299, 10.1136/bmj.i4086, 10.1186/2046-4053-4-1]
[12]   Ten simple rules for neuroimaging meta-analysis [J].
Mueller, Veronika I. ;
Cieslik, Edna C. ;
Laird, Angela R. ;
Fox, Peter T. ;
Radua, Joaquim ;
Mataix-Cols, David ;
Tench, Christopher R. ;
Yarkoni, Tal ;
Nichols, Thomas E. ;
Turkeltaub, Peter E. ;
Wager, Tor D. ;
Eickhoff, Simon B. .
NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS, 2018, 84 :151-161
[13]   A new meta-analytic method for neuroimaging studies that combines reported peak coordinates and statistical parametric maps [J].
Radua, J. ;
Mataix-Cols, D. ;
Phillips, M. L. ;
El-Hage, W. ;
Kronhaus, D. M. ;
Cardoner, N. ;
Surguladze, S. .
EUROPEAN PSYCHIATRY, 2012, 27 (08) :605-611
[14]   What causes psychosis? An umbrella review of risk and protective factors [J].
Radua, Joaquim ;
Ramella-Cravaro, Valentina ;
Ioannidis, John P. A. ;
Reichenberg, Abraham ;
Phiphopthatsanee, Nacharin ;
Amir, Taha ;
Thoo, Hyi Yenn ;
Oliver, Dominic ;
Davies, Cathy ;
Morgan, Craig ;
McGuire, Philip ;
Murray, Robin M. ;
Fusar-Poli, Paolo .
WORLD PSYCHIATRY, 2018, 17 (01) :49-66
[15]   Multimodal Voxel-Based Meta-Analysis of White Matter Abnormalities in Obsessive-Compulsive Disorder [J].
Radua, Joaquim ;
Grau, Mar ;
van den Heuvel, Odile A. ;
Thiebaut de Schotten, Michel ;
Stein, Dan J. ;
Canales-Rodriguez, Erick J. ;
Catani, Marco ;
Mataix-Cols, David .
NEUROPSYCHOPHARMACOLOGY, 2014, 39 (07) :1547-1557
[16]   Anisotropic kernels for coordinate-based meta-analyses of neuroimaging studies [J].
Radua, Joaquim ;
Rubia, Katya ;
Jorge Canales-Rodriguez, Erick ;
Pomarol-Clotet, Edith ;
Fusar-Poli, Paolo ;
Mataix-Cols, David .
FRONTIERS IN PSYCHIATRY, 2014, 5
[17]   Voxel-wise meta-analysis of grey matter changes in obsessive-compulsive disorder [J].
Radua, Joaquim ;
Mataix-Cols, David .
BRITISH JOURNAL OF PSYCHIATRY, 2009, 195 (05) :393-402
[18]   Threshold-free cluster enhancement: Addressing problems of smoothing, threshold dependence and localisation in cluster inference [J].
Smith, Stephen M. ;
Nichols, Thomas E. .
NEUROIMAGE, 2009, 44 (01) :83-98
[19]   Meta-analysis of the functional neuroanatomy of single-word reading: Method and validation [J].
Turkeltaub, PE ;
Eden, GF ;
Jones, KM ;
Zeffiro, TA .
NEUROIMAGE, 2002, 16 (03) :765-780
[20]   Meta-analysis of functional neuroimaging data: current and future directions [J].
Wager, Tor D. ;
Lindquist, Martin ;
Kaplan, Lauren .
SOCIAL COGNITIVE AND AFFECTIVE NEUROSCIENCE, 2007, 2 (02) :150-158