Low N2O emissions from wheat in a wheat-rice double cropping system due to manure substitution are associated with changes in the abundance of functional microbes

Fertilization has been shown to affect nitrogen (N) cycling and its related functional microbes in agricultural soils. However, the linkage between soil N2O emissions and N-related functional genes under different fertilization strategies from wheat in a wheat-rice double cropping system is rarely examined. Here, we carried out a two-year field study to examine the response of soil N2O emissions driven by N cycling functional genes [archaeal and bacterial amoA (AOA + AOB), nirS, nirK and nosZ] to different fertilization strategies in a wheat cropland of subtropical China. Three fertilizer treatments were established consisting of chemical phosphorus (P) and potassium (K) fertilizer application (PK), chemical N (urea) and PK fertilizer application (NPK), and chemical NPK fertilizer application with chemical N partially replaced with manure (composted pig manure) (NPKM). Over the two wheat seasons, seasonal total N2O emissions averaged 0.66, 3.60 and 3.11 kg N ha(-1) for PK, NPK and NPKM plots, respectively. Relative to the NPK treatment, the NPKM treatment significantly decreased N2O emissions by 14 % without compromising grain yield, with a lowered combined fertilizer-induced emission factor (EF) of 1.02 %. Compared with the PK treatment, N fertilization consistently and significantly increased the abundance of ammonium-oxidation bacteria (AOB), nirS, nirK and nosZ genes. The nosZ gene, which drives N2O reduction during denitrification, showed a greater extent under NPKM with manure N combination. The AOB had a more sensitive response than ammonium-oxidation archaea (AOA) to chemical N fertilization. Seasonal N2O emissions showed significant positive correlations with AOB gene abundance and the ratio of (nirK+nirS)/nosZ, while had a negative correlation with nosZ gene abundance across N fertilized treatments. The N2O-related microbial composition of functional genes was significantly changed by N fertilizer application and also showed contrasting patterns between treatments of chemical N fertilizer with and without manure N substitution. Together, partially replacing chemical N fertilizer with manure reduced N2O emissions from wheat in a wheat-rice double cropping system, mainly through decreasing AOB associated-nitrifying potential, and particularly stimulating N2O reduction.