Complete genome sequence of Marinomonas arctica BSI20414, a giant antifreeze protein-producing bacterium isolated from Arctic sea ice

被引:4
作者
Liao, Li [1 ,2 ]
Gao, Shanhui [1 ,3 ]
Xu, Yi [3 ]
Su, Shiyuan [1 ]
Wen, Jiao [1 ]
Yu, Yong [1 ]
Chen, Bo [1 ]
机构
[1] MNR, Key Lab Polar Sci, Polar Res Inst China, 451 Jinqiao Rd, Shanghai 200136, Peoples R China
[2] Southern Marine Sci & Engn Guangdong Lab Zhuhai, Zhuhai 519000, Peoples R China
[3] Univ Shanghai Sci & Technol, Sch Med Instrument & Food Engn, Shanghai 200093, Peoples R China
关键词
Sea ice; Marinomonas; AFP; Antifreeze protein; Genome; BINDING PROTEINS; COMMUNITY; DATABASE; GENES;
D O I
10.1016/j.margen.2020.100829
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Sea ice in the polar oceans is a dynamic and challenging environment for life to survive, with extreme gradients of temperature, salinity and nutrients etc., as well as formation of ice crystals. Bacteria surviving in sea ice attract broad attention from academia and industry, due to fascinating mechanisms for adaptation. Here we described the complete genome sequence of Marinomonas arctica BSI20414, isolated from Arctic sea ice. The strain tolerated high salinity and low temperature. Genetic features commonly related to adaptation to oxidative stress, osmotic stress and cold stress were detected in the genome. In addition, a large adhesion protein containing a putative antifreeze protein (AFP) domain was detected in the genome, similar with the giant AFP MpIBP from M. primoryensis. The presence of the putative AFP could facilitate M. arctica BSI20414 to bind to sea ice for favorable conditions and protect it from freezing. The genome sequence and the AFP reported here can provide insights into adaptation to sea ice and can be explored further for biotechnological applications.
引用
收藏
页数:4
相关论文
共 32 条
[1]   Sea Ice Ecosystems [J].
Arrigo, Kevin R. .
ANNUAL REVIEW OF MARINE SCIENCE, VOL 6, 2014, 6 :439-467
[2]   Ice-Binding Proteins and Their Function [J].
Bar Dolev, Maya ;
Braslavsky, Ido ;
Davies, Peter L. .
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 85, 2016, 85 :515-542
[3]   Ice Binding Proteins: Diverse Biological Roles and Applications in Different Types of Industry [J].
Bialkowska, Aneta ;
Majewska, Edyta ;
Olczak, Aleksandra ;
Twarda-Clapa, Aleksandra .
BIOMOLECULES, 2020, 10 (02)
[4]   The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 [J].
Boeckmann, B ;
Bairoch, A ;
Apweiler, R ;
Blatter, MC ;
Estreicher, A ;
Gasteiger, E ;
Martin, MJ ;
Michoud, K ;
O'Donovan, C ;
Phan, I ;
Pilbout, S ;
Schneider, M .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :365-370
[5]   Microbial ecology of the cryosphere: sea ice and glacial habitats [J].
Boetius, Antje ;
Anesio, Alexandre M. ;
Deming, Jody W. ;
Mikucki, Jill A. ;
Rapp, Josephine Z. .
NATURE REVIEWS MICROBIOLOGY, 2015, 13 (11) :677-690
[6]   Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene [J].
Bowman, Jeff S. ;
Rasmussen, Simon ;
Blom, Nikolaj ;
Deming, Jody W. ;
Rysgaard, Soren ;
Sicheritz-Ponten, Thomas .
ISME JOURNAL, 2012, 6 (01) :11-20
[7]   Psychrophilic lifestyles: mechanisms of adaptation and biotechnological tools [J].
Collins, Tony ;
Margesin, Rosa .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2019, 103 (07) :2857-2871
[8]   Ice-binding proteins: a remarkable diversity of structures for stopping and starting ice growth [J].
Davies, Peter L. .
TRENDS IN BIOCHEMICAL SCIENCES, 2014, 39 (11) :548-555
[9]   Identifying bacterial genes and endosymbiont DNA with Glimmer [J].
Delcher, Arthur L. ;
Bratke, Kirsten A. ;
Powers, Edwin C. ;
Salzberg, Steven L. .
BIOINFORMATICS, 2007, 23 (06) :673-679
[10]   Structure-based characterization and antifreeze properties of a hyperactive ice-binding protein from the Antarctic bacterium Flavobacterium frigoris PS1 [J].
Do, Hackwon ;
Kim, Soon-Jong ;
Kim, Hak Jun ;
Lee, Jun Hyuck .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2014, 70 :1061-1073