Using ancient protein kinases to unravel a modern cancer drug's mechanism

被引:114
作者
Wilson, C. [1 ,2 ]
Agafonov, R. V. [1 ,2 ]
Hoemberger, M. [1 ,2 ]
Kutter, S. [1 ,2 ]
Zorba, A. [1 ,2 ]
Halpin, J. [1 ,2 ]
Buosi, V. [1 ,2 ]
Otten, R. [1 ,2 ]
Waterman, D. [1 ,2 ]
Theobald, D. L. [2 ]
Kern, D. [1 ,2 ]
机构
[1] Brandeis Univ, Howard Hughes Med Inst, Waltham, MA 02452 USA
[2] Brandeis Univ, Dept Biochem, Waltham, MA 02452 USA
基金
美国国家卫生研究院;
关键词
C-SRC; RESURRECTED PROTEINS; CRYSTAL-STRUCTURE; TYROSINE KINASES; ABL KINASE; EVOLUTION; RECONSTRUCTION; CONFORMATION; INHIBITORS; IMATINIB;
D O I
10.1126/science.aaa1823
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Macromolecular function is rooted in energy landscapes, where sequence determines not a single structure but an ensemble of conformations. Hence, evolution modifies a protein's function by altering its energy landscape. Here, we recreate the evolutionary pathway between two modern human oncogenes, Src and Abl, by reconstructing their common ancestors. Our evolutionary reconstruction combined with x-ray structures of the common ancestor and pre-steady-state kinetics reveals a detailed atomistic mechanism for selectivity of the successful cancer drug Gleevec. Gleevec affinity is gained during the evolutionary trajectory toward Abl and lost toward Src, primarily by shifting an induced-fit equilibrium that is also disrupted in the clinical T315I resistance mutation. This work reveals the mechanism of Gleevec specificity while offering insights into how energy landscapes evolve.
引用
收藏
页码:882 / 886
页数:5
相关论文
共 33 条
[1]   Energetic dissection of Gleevec's selectivity toward human tyrosine kinases [J].
Agafonov, Roman V. ;
Wilson, Christopher ;
Otten, Renee ;
Buosi, Vanessa ;
Kern, Dorothee .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2014, 21 (10) :848-853
[2]   Molecular Dynamics Simulations Show That Conformational Selection Governs the Binding Preferences of Imatinib for Several Tyrosine Kinases [J].
Aleksandrov, Alexey ;
Simonson, Thomas .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (18) :13807-13815
[3]  
[Anonymous], 2007, Ancestral Sequence Reconstruction
[4]   The crystal structure of a c-Src complex in an active conformation suggests possible steps in c-Src activation [J].
Cowan-Jacob, SW ;
Fendrich, G ;
Manley, PW ;
Jahnke, W ;
Fabbro, D ;
Liebetanz, J ;
Meyer, T .
STRUCTURE, 2005, 13 (06) :861-871
[5]   The Evolution of Protein Kinase Inhibitors from Antagonists to Agonists of Cellular Signaling [J].
Dar, Arvin C. ;
Shokat, Kevan M. .
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 80, 2011, 80 :769-795
[6]   Strategies to overcome resistance to targeted protein kinase inhibitors [J].
Daub, H ;
Specht, K ;
Ullrich, A .
NATURE REVIEWS DRUG DISCOVERY, 2004, 3 (12) :1001-1010
[7]   Mechanistic approaches to the study of evolution: the functional synthesis [J].
Dean, Antony M. ;
Thornton, Joseph W. .
NATURE REVIEWS GENETICS, 2007, 8 (09) :675-688
[8]   Missense meanderings in sequence space: A biophysical view of protein evolution [J].
DePristo, MA ;
Weinreich, DM ;
Hartl, DL .
NATURE REVIEWS GENETICS, 2005, 6 (09) :678-687
[9]   ACTIVITY PHOSPHORYLATING TYROSINE IN POLYOMA T-ANTIGEN IMMUNOPRECIPITATES [J].
ECKHART, W ;
HUTCHINSON, MA ;
HUNTER, T .
CELL, 1979, 18 (04) :925-933
[10]   Retracing Evolution of Red Fluorescence in GFP-Like Proteins from Faviina Corals [J].
Field, Steven F. ;
Matz, Mikhail V. .
MOLECULAR BIOLOGY AND EVOLUTION, 2010, 27 (02) :225-233