Bridging microscopic and mesoscopic simulations of lipid bilayers

被引:100
作者
Ayton, G
Voth, GA
机构
[1] Univ Utah, Dept Chem, Salt Lake City, UT 84112 USA
[2] Univ Utah, Henry Eyring Ctr Theoret Chem, Salt Lake City, UT 84112 USA
关键词
D O I
10.1016/S0006-3495(02)75336-8
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
A lipid bilayer is modeled using a mesoscopic model designed to bridge atomistic bilayer simulations with macro-scale continuum-level simulation. Key material properties obtained from detailed atomistic-level simulations are used to parameterize the meso-scale model. The fundamental length and time scale of the meso-scale simulation are at least an order of magnitude beyond that used at the atomistic level. Dissipative particle dynamics cast in a new membrane formulation provides the simulation methodology. A meso-scale representation of a dimyristoylphosphatidylcholine membrane is examined in the high and low surface tension regimes. At high surface tensions, the calculated modulus is found to be slightly less than the atomistically determined value. This result agrees with the theoretical prediction that high-strain thermal undulations still persist, which have the effect of reducing the value of the atomistically determined modulus. Zero surface tension simulations indicate the presence of strong thermal undulatory modes, whereas the undulation spectrum and the calculated bending modulus are in excellent agreement with theoretical predictions and experiment.
引用
收藏
页码:3357 / 3370
页数:14
相关论文
共 44 条
[1]   Calculating the bulk modulus for a lipid bilayer with nonequilibrium molecular dynamics simulation [J].
Ayton, G ;
Smondyrev, AM ;
Bardenhagen, SG ;
McMurtry, P ;
Voth, GA .
BIOPHYSICAL JOURNAL, 2002, 82 (03) :1226-1238
[2]   Interfacing molecular dynamics and macro-scale simulations for lipid bilayer vesicles [J].
Ayton, G ;
Smondyrev, AM ;
Bardenhagen, SG ;
McMurtry, P ;
Voth, GA .
BIOPHYSICAL JOURNAL, 2002, 83 (02) :1026-1038
[3]   Interfacing continuum and molecular dynamics: An application to lipid bilayers [J].
Ayton, G ;
Bardenhagen, SG ;
McMurtry, P ;
Sulsky, D ;
Voth, GA .
JOURNAL OF CHEMICAL PHYSICS, 2001, 114 (15) :6913-6924
[4]   Interfacing molecular dynamics with continuum dynamics in computer simulation: Toward an application to biological membranes [J].
Ayton, GSD ;
Bardenhagen, S ;
McMurtry, P ;
Sulsky, D ;
Voth, GA .
IBM JOURNAL OF RESEARCH AND DEVELOPMENT, 2001, 45 (3-4) :417-426
[5]   Two photon fluorescence microscopy of coexisting lipid domains in giant unilamellar vesicles of binary phospholipid mixtures [J].
Bagatolli, LA ;
Gratton, E .
BIOPHYSICAL JOURNAL, 2000, 78 (01) :290-305
[6]   Giant phospholipid vesicles: comparison among the whole lipid sample characteristics using different preparation methods - A two photon fluorescence microscopy study [J].
Bagatolli, LA ;
Parasassi, T ;
Gratton, E .
CHEMISTRY AND PHYSICS OF LIPIDS, 2000, 105 (02) :135-147
[7]   Simulations of the erythrocyte cytoskeleton at large deformation. I. Microscopic models [J].
Boey, SK ;
Boal, DH ;
Discher, DE .
BIOPHYSICAL JOURNAL, 1998, 75 (03) :1573-1583
[8]  
DELEEUW SW, 1980, P ROY SOC LOND A MAT, V373, P26
[9]   Simulations of the erythrocyte cytoskeleton at large deformation. II. Micropipette aspiration [J].
Discher, DE ;
Boal, DH ;
Boey, SK .
BIOPHYSICAL JOURNAL, 1998, 75 (03) :1584-1597
[10]   A dissipative particle dynamics method for modeling the geometrical packing of filler particles in polymer composites [J].
Elliott, JA ;
Windle, AH .
JOURNAL OF CHEMICAL PHYSICS, 2000, 113 (22) :10367-10376