Protein folding and surface interaction phase diagrams in vitro and in cells

被引:4
作者
Gruebele, Martin [1 ]
机构
[1] Univ Illinois, Ctr Biophys & Quantitat Biol, Dept Chem & Phys, 600 South Mathews Ave Box 5-6, Urbana, IL 61801 USA
关键词
protein folding; quinary structure; E; coli; mammalian cell; liquid– liquid phase‐ separated regions; QUINARY STRUCTURE; PHOSPHOGLYCERATE KINASE; STABILITY; DENATURATION; ENZYMES; ORGANIZATION; MECHANISMS; SEPARATION; DYNAMICS; MODEL;
D O I
10.1002/1873-3468.14058
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Protein stability is subject to environmental perturbations such as pressure and crowding, as well as sticking to other macromolecules and quinary structure. Thus, the environment inside and outside the cell plays a key role in how proteins fold, interact, and function on the scale from a few molecules to macroscopic ensembles. This review discusses three aspects of protein phase diagrams: first, the relevance of phase diagrams to protein folding and function in vitro and in cells; next, how the evolution of protein surfaces impacts on interaction phase diagrams; and finally, how phase separation plays a role on much larger length-scales than individual proteins or oligomers, when liquid phase-separated regions form to assist protein function and cell homeostasis.
引用
收藏
页码:1267 / 1274
页数:8
相关论文
共 68 条
[1]   MOLECULAR MECHANISMS OF ACID DENATURATION - THE ROLE OF HISTIDINE-RESIDUES IN THE PARTIAL UNFOLDING OF APOMYOGLOBIN [J].
BARRICK, D ;
HUGHSON, FM ;
BALDWIN, RL .
JOURNAL OF MOLECULAR BIOLOGY, 1994, 237 (05) :588-601
[2]   Understanding the role of hydrogen bonds in water dynamics and protein stability [J].
Bianco, Valentino ;
Iskrov, Svilen ;
Franzese, Giancarlo .
JOURNAL OF BIOLOGICAL PHYSICS, 2012, 38 (01) :27-48
[3]   Proteins: "Boil 'Em, Mash 'Em, Stick 'Em in a Stew" [J].
Boob, Mayank ;
Wang, Yuhan ;
Gruebele, Martin .
JOURNAL OF PHYSICAL CHEMISTRY B, 2019, 123 (40) :8341-8350
[4]   Quantitative High-Resolution Imaging of Live Microbial Cells at High Hydrostatic Pressure [J].
Bourges, Anais C. ;
Lazarev, Alexander ;
Declerck, Nathalie ;
Rogers, Karyn L. ;
Royer, Catherine A. .
BIOPHYSICAL JOURNAL, 2020, 118 (11) :2670-2679
[5]   Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression [J].
Cai, Danfeng ;
Feliciano, Daniel ;
Dong, Peng ;
Flores, Eduardo ;
Gruebele, Martin ;
Porat-Shliom, Natalie ;
Sukenik, Shahar ;
Liu, Zhe ;
Lippincott-Schwartz, Jennifer .
NATURE CELL BIOLOGY, 2019, 21 (12) :1578-+
[6]   Weak protein-protein interactions are sufficient to drive assembly of hepatitis B virus capsids [J].
Ceres, P ;
Zlotnick, A .
BIOCHEMISTRY, 2002, 41 (39) :11525-11531
[7]   Pressure- and heat-induced protein unfolding in bacterial cells: crowding vs. sticking [J].
Chen, Timothy ;
Dave, Kapil ;
Gruebele, Martin .
FEBS LETTERS, 2018, 592 (08) :1357-1365
[8]   Pressure Sensitivity of SynGAP/PSD-95 Condensates as a Model for Postsynaptic Densities and its Biophysical and Neurological Ramifications [J].
Cinar, Hasan ;
Oliva, Rosario ;
Chen, Xudong ;
Zhang, Mingjie ;
Chan, Hue Sun ;
Winter, Roland ;
Lin, Yi-Hsuan .
CHEMISTRY-A EUROPEAN JOURNAL, 2020, 26 (48) :11024-11031
[9]   Temperature, Hydrostatic Pressure, and Osmolyte Effects on Liquid-Liquid Phase Separation in Protein Condensates: Physical Chemistry and Biological Implications [J].
Cinar, Hasan ;
Fetahaj, Zamira ;
Cinar, Suleyman ;
Vernon, Robert M. ;
Chan, Hue Sun ;
Winter, Roland H. A. .
CHEMISTRY-A EUROPEAN JOURNAL, 2019, 25 (57) :13049-13069
[10]   A cell is more than the sum of its (dilute) parts: A brief history of quinary structure [J].
Cohen, Rachel D. ;
Pielak, Gary J. .
PROTEIN SCIENCE, 2017, 26 (03) :403-413