Global minimum structure searches via particle swarm optimization

被引:147
作者
Call, Seth T.
Zubarev, Dmitry Yu.
Boldyrev, Alexander I. [1 ]
机构
[1] Utah State Univ, Dept Chem & Biochem, Logan, UT 84322 USA
[2] Utah State Univ, Dept Comp Sci, Logan, UT 84322 USA
关键词
global minimum search; particle swarm optimization;
D O I
10.1002/jcc.20621
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Novel implementation of the evolutionary approach known as particle swarm optimization (PSO) capable of finding the global minimum of the potential energy surface of atomic assemblies is reported. This is the first time the PSO technique has been used to perform global optimization of minimum structure search for chemical systems. Significant improvements have been introduced to the original PSO algorithm to increase its efficiency and reliability and adapt it to chemical systems. The developed software has successfully found the lowest-energy structures of the LJ(26) Lennard-Jones cluster, anionic silicon hydride Si2H5-, and triply hydrated hydroxide ion OH- (H2O)(3). It requires relatively small population sizes and demonstrates fast convergence. Efficiency of PSO has been compared with simulated annealing, and the gradient embedded genetic algorithm. (C) 2007 Wiley Periodicals, Inc.
引用
收藏
页码:1177 / 1186
页数:10
相关论文
共 152 条
[1]   Anharmonic force field, vibrational energies, and barrier to inversion of SiH3- [J].
Aarset, K ;
Császár, AG ;
Sibert, EL ;
Allen, WD ;
Schaefer, HF ;
Klopper, W ;
Noga, J .
JOURNAL OF CHEMICAL PHYSICS, 2000, 112 (09) :4053-4063
[2]   Search for the Lin0/+1/-1 (n=5-7) lowest-energy structures using the ab initio Gradient Embedded Genetic Algorithm (GEGA).: Elucidation of the chemical bonding in the lithium clusters [J].
Alexandrova, AN ;
Boldyrev, AI .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2005, 1 (04) :566-580
[3]   Structure of the NaxClx+1- (x=1-4) clusters via ab initio genetic algorithm and photoelectron spectroscopy [J].
Alexandrova, AN ;
Boldyrev, AI ;
Fu, YJ ;
Yang, X ;
Wang, XB ;
Wang, LS .
JOURNAL OF CHEMICAL PHYSICS, 2004, 121 (12) :5709-5719
[4]   GEOMETRICAL STRUCTURES, FORCE-CONSTANTS, AND VIBRATIONAL-SPECTRA OF SIH, SIH2, SIH3, AND SIH4 [J].
ALLEN, WD ;
SCHAEFER, HF .
CHEMICAL PHYSICS, 1986, 108 (02) :243-274
[5]  
[Anonymous], MOLDEN3 4
[6]   REASSIGNMENT OF THE SI2- PHOTODETACHMENT SPECTRA [J].
ARNOLD, CC ;
KITSOPOULOS, TN ;
NEUMARK, DM .
JOURNAL OF CHEMICAL PHYSICS, 1993, 99 (01) :766-768
[7]  
Back T., 1990, EVOLUTIONARY ALGORIT
[8]   Archimedean polyhedron structure yields a lower energy atomic cluster [J].
Barron, C ;
Gomez, S ;
Romero, D .
APPLIED MATHEMATICS LETTERS, 1996, 9 (05) :75-78
[9]   SOME MECHANISTIC PROBLEMS IN THE KINETIC MODELING OF MONOSILANE PYROLYSIS [J].
BECERRA, R ;
WALSH, R .
JOURNAL OF PHYSICAL CHEMISTRY, 1992, 96 (26) :10856-10862
[10]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652