Thoughts on how to think (and talk) about RNA structure

被引:93
作者
Vicens, Quentin [1 ,2 ]
Kieft, Jeffrey S. [1 ,2 ]
机构
[1] Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Anschutz Med Campus, Aurora, CO 80045 USA
[2] Univ Colorado, Denver Sch Med, RNA BioSci Initiat, Aurora, CO 80045 USA
关键词
RNA structure; RNA dynamics; RNA folding; SECONDARY STRUCTURE; BASE-PAIRS; ACID; DYNAMICS; MODEL; RIBOSWITCH; SEQUENCE; DATABASE; INTERMEDIATE; CONFORMATION;
D O I
10.1073/pnas.2112677119
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Recent events have pushed RNA research into the spotlight. Continued discoveries of RNA with unexpected diverse functions in healthy and diseased cells, such as the role of RNA as both the source and countermeasure to a severe acute respiratory syndrome coronavirus 2 infection, are igniting a new passion for understanding this functionally and structurally versatile molecule. Although RNA structure is key to function, many foundational characteristics of RNA structure are misunderstood, and the default state of RNA is often thought of and depicted as a single floppy strand. The purpose of this perspective is to help adjust mental models, equipping the community to better use the fundamental aspects of RNA structural information in new mechanistic models, enhance experimental design to test these models, and refine data interpretation. We discuss six core observations focused on the inherent nature of RNA structure and how to incorporate these characteristics to better understand RNA structure. We also offer some ideas for future efforts to make validated RNA structural information available and readily used by all researchers.
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页数:9
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