Induction of broadly neutralizing antibodies in Germinal Centre simulations

被引:23
作者
Robert, Philippe A. [1 ,2 ]
Marschall, Andrea L. J. [1 ,2 ]
Meyer-Hermann, Michael [1 ,2 ,3 ]
机构
[1] Helmholtz Ctr Infect Res, Dept Syst Immunol, Inhoffenstr 7, D-38124 Braunschweig, Germany
[2] Helmholtz Ctr Infect Res, Braunschweig Integrated Ctr Syst Biol, Inhoffenstr 7, D-38124 Braunschweig, Germany
[3] Tech Univ Carolo Wilhelmina Braunschweig, Inst Biochem Biotechnol & Bioinformat, Braunschweig, Germany
关键词
EFFICIENT AFFINITY MATURATION; HIV-1; ANTIBODIES; B-CELLS; MODEL; SELECTION; VACCINE; EVOLUTION; PROTEIN; REPERTOIRE; INFLUENZA;
D O I
10.1016/j.copbio.2018.01.006
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Vaccines against mutating pathogens such as influenza, HIV, or plasmodium are poorly protective towards new evolving strains. Rare individuals naturally mount broadly neutralizing antibodies covering most strains, but the requirements for their induction are unknown. The antibody response to vaccination has been recapitulated by in silico models that proposed two opposite schemes: A theory of 'frustration' where one epitope at a time leads to optimal antibody breadth through sequential immunizations, that was proven successful for HIV vaccination in primates. Another theory supports vaccination with cocktails of multiple representative epitopes in a unique prime and boost, which succeeded for influenza in mice. We discuss how in silico models differ in their assumptions, with particular focus on protein affinity representation.
引用
收藏
页码:137 / 145
页数:9
相关论文
共 42 条
[21]   Recycling probability and dynamical properties of germinal center reactions [J].
Meyer-Hermann, M ;
Deutsch, A ;
Or-Guil, M .
JOURNAL OF THEORETICAL BIOLOGY, 2001, 210 (03) :265-285
[22]   A Theory of Germinal Center B Cell Selection, Division, and Exit [J].
Meyer-Hermann, Michael ;
Mohr, Elodie ;
Pelletier, Nadege ;
Zhang, Yang ;
Victora, Gabriel D. ;
Toellner, Kai-Michael .
CELL REPORTS, 2012, 2 (01) :162-174
[23]   Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading [J].
Miyazawa, S ;
Jernigan, RL .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 256 (03) :623-644
[24]   Evolution of the Humoral Response during HCV Infection: Theories on the Origin of Broadly Neutralizing Antibodies and Implications for Vaccine Design [J].
Murira, Armstrong ;
Lapierre, Pascal ;
Lamarre, Alain .
ADVANCES IN IMMUNOLOGY, VOL 129, 2016, 129 :55-107
[25]   Host-Pathogen Coevolution and the Emergence of Broadly Neutralizing Antibodies in Chronic Infections [J].
Nourmohammad, Armita ;
Otwinowski, Jakub ;
Plotkin, Joshua B. .
PLOS GENETICS, 2016, 12 (07)
[26]   Dynamics of one-pass germinal center models: Implications for affinity maturation [J].
Oprea, M ;
Van Nimwegen, E ;
Perelson, AS .
BULLETIN OF MATHEMATICAL BIOLOGY, 2000, 62 (01) :121-153
[27]   Use of broadly neutralizing antibodies for HIV-1 prevention [J].
Pegu, Amarendra ;
Hessell, Ann J. ;
Mascola, John R. ;
Haigwood, Nancy L. .
IMMUNOLOGICAL REVIEWS, 2017, 275 (01) :296-312
[28]   THEORETICAL-STUDIES OF CLONAL SELECTION - MINIMAL ANTIBODY REPERTOIRE SIZE AND RELIABILITY OF SELF-NON-SELF DISCRIMINATION [J].
PERELSON, AS ;
OSTER, GF .
JOURNAL OF THEORETICAL BIOLOGY, 1979, 81 (04) :645-670
[29]   Somatic evolution in the immune system: The need for germinal centers for efficient affinity maturation [J].
Pierre, DM ;
Goldman, D ;
BarYam, Y ;
Perelson, AS .
JOURNAL OF THEORETICAL BIOLOGY, 1997, 186 (02) :159-171
[30]   A one-shot germinal center model under protein structural stability constraints [J].
Raoof, Sana ;
Heo, Muyoung ;
Shakhnovich, Eugene I. .
PHYSICAL BIOLOGY, 2013, 10 (02)