Characterization of the complete chloroplast genome of the Pistacia vera L

被引：4

作者：

Mao, Weitao ^{[1
,2
]}

Yao, Guoxin ^{[1
]}

Chen, Bo ^{[3
]}

Pan, Qinghua ^{[3
]}

Wang, Hai ^{[4
]}

Hu, Guanglong ^{[3
]}

Xin, Guo ^{[4
]}

机构：

[1] Hubei Engn Univ, Hubei Key Lab Qual Control Characterist Fruits &, Coll Life Sci & Technol, Wuhan, Hubei, Peoples R China

[2] Hubei Univ, Sch Life Sci, Wuhan, Hubei, Peoples R China

[3] Beijing Acad Forestry & Pomol Sci, Beijing 100093, Peoples R China

[4] Longnan Econ Forest Res Inst, Walnut Res Inst, Longnan 746000, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期

关键词：

Pistacia vera L; chloroplast genome; Illumina sequencing; phylogenetic analysis; ALGORITHM;

D O I：

10.1080/23802359.2019.1692723

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The complete chloroplast genome sequence of Pistacia vera was mapped and determined based on Illumina sequencing data. The complete chloroplast genome is 160,654 bp and contains a pair of inverted repeat regions of 26,596 bp each, a large single-copy region of 88,376 bp, and a small single-copy region of 19,086 bp. It harbors 113 genes, including 79 protein-coding genes,4 ribosomal RNA genes, and 30 transfer RNA genes. Phylogenetic analysis based on chloroplast genomes indicates that Pistacia vera is closely related to that of Pistacia weinmanniifolia.

引用

页码：4140 / 4141

页数：2

共 12 条

[1]

Al-Saghir M. G., 2009, International Journal of Botany, V5, P255, DOI 10.3923/ijb.2009.255.257

[2] BASIC LOCAL ALIGNMENT SEARCH TOOL [J].

ALTSCHUL, SF ;

GISH, W ;

MILLER, W ;

MYERS, EW ;

LIPMAN, DJ .

JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410

[3] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[4] GenomeVx: simple web-based creation of editable circular chromosome maps [J].

Conant, Gavin C. ;

Wolfe, Kenneth H. .

BIOINFORMATICS, 2008, 24 (06) :861-862

[5] PLANN: A COMMAND-LINE APPLICATION FOR ANNOTATING PLASTOME SEQUENCES [J].

Huang, Daisie I. ;

Cronk, Quentin C. B. .

APPLICATIONS IN PLANT SCIENCES, 2015, 3 (08)

[6] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies [J].

Lam-Tung Nguyen ;

Schmidt, Heiko A. ;

von Haeseler, Arndt ;

Bui Quang Minh .

MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) :268-274

[7]

[李金璐 Li Jinlu], 2013, [植物学报, Chinese Bulletin of Botany], V48, P72

[8] In vitro micrografting of mature pistachio (Pistacia vera var. Siirt) [J].

Onay, A ;

Pirinç, V ;

Yildirim, H ;

Basaran, D .

PLANT CELL TISSUE AND ORGAN CULTURE, 2004, 77 (02) :215-219

[9] Chloroplast DNA analysis of Tunisian pistachio (Pistacia vera L.): Sequence variations of the intron trnL (UAA) [J].

Sarra, Choulak ;

Soumaya, Rhouma-Chatti ;

Zined, Marzouk ;

Khaled, Said ;

Noureddine, Chatti ;

Khaled, Chatti .

SCIENTIA HORTICULTURAE, 2015, 191 :57-64

[10]

Sheibani A., 1995, Acta Horticulturae, P165

← 1 2 →