Codon Usage in Trypanosomatids: The Bias of Expression

被引:1
作者
Erben, Esteban D. [1 ]
Clayton, Christine [2 ]
机构
[1] DKFZ ZMBH Alliance, German Canc Res Ctr DKFZ, Neuenheimer Feld 280, D-69120 Heidelberg, Germany
[2] Heidelberg Univ, Zentrum Mol Biol, DKFZ ZMBH Alliance, Neuenheimer Feld 282, D-69120 Heidelberg, Germany
关键词
MESSENGER-RNA DECAY; OPTIMALITY;
D O I
10.1016/j.pt.2018.06.001
中图分类号
R38 [医学寄生虫学]; Q [生物科学];
学科分类号
07 ; 0710 ; 09 ; 100103 ;
摘要
Translation and RNA decay, two processes in which all mRNAs are engaged, are intimately related processes. Two new studies demonstrate that, in trypanosomatids, codon usage largely shapes mRNA abundance in a translation-dependent manner. The findings indicate that mRNA decay control by codon choice is an ancient and conserved mechanism.
引用
收藏
页码:635 / 637
页数:4
相关论文
共 10 条
[1]   Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression [J].
Antwi, Enoch B. ;
Haanstra, Jurgen R. ;
Ramasamy, Gowthaman ;
Jensen, Bryan ;
Droll, Dorothea ;
Rojas, Federico ;
Minia, Igor ;
Terrao, Monica ;
Merce, Clementine ;
Matthews, Keith ;
Myler, Peter J. ;
Parsons, Marilyn ;
Clayton, Christine .
BMC GENOMICS, 2016, 17
[2]   Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels [J].
Fadda, Abeer ;
Ryten, Mark ;
Droll, Dorothea ;
Rojas, Federico ;
Faerber, Valentin ;
Haanstra, Jurgen R. ;
Merce, Clemetine ;
Bakker, Barbara M. ;
Matthews, Keith ;
Clayton, Christine .
MOLECULAR MICROBIOLOGY, 2014, 94 (02) :307-326
[3]   Codon optimality, bias and usage in translation and mRNA decay [J].
Hanson, Gavin ;
Coller, Jeff .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2018, 19 (01) :20-30
[4]  
Jeacock L, 2018, ELIFE, V7, DOI [10.7554/eLife.32496, 10.7554/elife.32496]
[5]   Translation Regulation and RNA Granule Formation after Heat Shock of Procyclic Form Trypanosoma brucei: Many Heat-Induced mRNAs Are also Increased during Differentiation to Mammalian-Infective Forms [J].
Minia, Igor ;
Merce, Clementine ;
Terrao, Monica ;
Clayton, Christine .
PLOS NEGLECTED TROPICAL DISEASES, 2016, 10 (09)
[6]   Universal function-specificity of codon usage [J].
Najafabadi, Hamed Shateri ;
Goodarzi, Hani ;
Salavati, Reza .
NUCLEIC ACIDS RESEARCH, 2009, 37 (21) :7014-7023
[7]   Codon choice directs constitutive mRNA levels in trypanosomes [J].
Nascimento, Janaina de Freitas ;
Kelly, Steven ;
Sunter, Jack ;
Carrington, Mark .
ELIFE, 2018, 7
[8]   Nuclear Compartmentalization Contributes to Stage-Specific Gene Expression Control in Trypanosoma cruzi [J].
Pastro, Lucia ;
Smircich, Pablo ;
Di Paolo, Andres ;
Becco, Lorena ;
Duhagon, Maria A. ;
Sotelo-Silveira, Jose ;
Garat, Beatriz .
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2017, 5
[9]   Codon Optimality Is a Major Determinant of mRNA Stability [J].
Presnyak, Vladimir ;
Alhusaini, Najwa ;
Chen, Ying-Hsin ;
Martin, Sophie ;
Morris, Nathan ;
Kline, Nicholas ;
Olson, Sara ;
Weinberg, David ;
Baker, Kristian E. ;
Graveley, Brenton R. ;
Coller, Jeff .
CELL, 2015, 160 (06) :1111-1124
[10]   The DEAD-Box Protein Dhh1 Promotes Decapping by Slowing Ribosome Movement [J].
Sweet, Thomas ;
Kovalak, Carrie ;
Coller, Jeff .
PLOS BIOLOGY, 2012, 10 (06)