共 70 条
Industrial systems biology and its impact on synthetic biology of yeast cell factories
被引:32
作者:

Fletcher, Eugene
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Biol & Biol Engn, Kemivagen 10, SE-41296 Gothenburg, Sweden
Chalmers Univ Technol, Novo Nordisk Fdn, Ctr Biosustainabil, Kemivagen 10, SE-41296 Gothenburg, Sweden Chalmers Univ Technol, Dept Biol & Biol Engn, Kemivagen 10, SE-41296 Gothenburg, Sweden

Krivoruchko, Anastasia
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Biol & Biol Engn, Kemivagen 10, SE-41296 Gothenburg, Sweden
Chalmers Univ Technol, Novo Nordisk Fdn, Ctr Biosustainabil, Kemivagen 10, SE-41296 Gothenburg, Sweden Chalmers Univ Technol, Dept Biol & Biol Engn, Kemivagen 10, SE-41296 Gothenburg, Sweden

Nielsen, Jens
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Biol & Biol Engn, Kemivagen 10, SE-41296 Gothenburg, Sweden
Chalmers Univ Technol, Novo Nordisk Fdn, Ctr Biosustainabil, Kemivagen 10, SE-41296 Gothenburg, Sweden
Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, DK-2970 Horsholm, Denmark Chalmers Univ Technol, Dept Biol & Biol Engn, Kemivagen 10, SE-41296 Gothenburg, Sweden
机构:
[1] Chalmers Univ Technol, Dept Biol & Biol Engn, Kemivagen 10, SE-41296 Gothenburg, Sweden
[2] Chalmers Univ Technol, Novo Nordisk Fdn, Ctr Biosustainabil, Kemivagen 10, SE-41296 Gothenburg, Sweden
[3] Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, DK-2970 Horsholm, Denmark
关键词:
systems biology;
yeast;
synthetic biology;
modeling;
fine chemicals;
metabolic engineering;
IMPROVED VANILLIN PRODUCTION;
SACCHAROMYCES-CEREVISIAE;
BAKERS-YEAST;
REGULATORY NETWORKS;
MULTIPLE GENES;
EXPRESSION;
PATHWAY;
MODEL;
BIOSYNTHESIS;
INTEGRATION;
D O I:
10.1002/bit.25870
中图分类号:
Q81 [生物工程学(生物技术)];
Q93 [微生物学];
学科分类号:
071005 ;
0836 ;
090102 ;
100705 ;
摘要:
Engineering industrial cell factories to effectively yield a desired product while dealing with industrially relevant stresses is usually the most challenging step in the development of industrial production of chemicals using microbial fermentation processes. Using synthetic biology tools, microbial cell factories such as Saccharomyces cerevisiae can be engineered to express synthetic pathways for the production of fuels, biopharmaceuticals, fragrances, and food flavors. However, directing fluxes through these synthetic pathways towards the desired product can be demanding due to complex regulation or poor gene expression. Systems biology, which applies computational tools and mathematical modeling to understand complex biological networks, can be used to guide synthetic biology design. Here, we present our perspective on how systems biology can impact synthetic biology towards the goal of developing improved yeast cell factories. (C) 2015 Wiley Periodicals, Inc.
引用
收藏
页码:1164 / 1170
页数:7
相关论文
共 70 条
[41]
CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae
[J].
Mans, Robert
;
van Rossum, Harmen M.
;
Wijsman, Melanie
;
Backx, Antoon
;
Kuijpers, Niels G. A.
;
van den Broek, Marcel
;
Daran-Lapujade, Pascale
;
Pronk, Jack T.
;
van Maris, Antonius J. A.
;
Daran, Jean-Marc G.
.
FEMS YEAST RESEARCH,
2015, 15 (02)
:1-15

论文数: 引用数:
h-index:
机构:

van Rossum, Harmen M.
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands

Wijsman, Melanie
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands

Backx, Antoon
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands

Kuijpers, Niels G. A.
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands

van den Broek, Marcel
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands

Daran-Lapujade, Pascale
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands

Pronk, Jack T.
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands

van Maris, Antonius J. A.
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands

Daran, Jean-Marc G.
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands
[42]
High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch
[J].
Michener, Joshua K.
;
Smolke, Christina D.
.
METABOLIC ENGINEERING,
2012, 14 (04)
:306-316

Michener, Joshua K.
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Dept Bioengn, Pasadena, CA 91125 USA Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA

Smolke, Christina D.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA
[43]
Microbial production of indolylglucosinolate through engineering of a multi-gene pathway in a versatile yeast expression platform
[J].
Mikkelsen, Michael Dalgaard
;
Buron, Line Due
;
Salomonsen, Bo
;
Olsen, Carl Erik
;
Hansen, Bjarne Gram
;
Mortensen, Uffe Hasbro
;
Halkier, Barbara Ann
.
METABOLIC ENGINEERING,
2012, 14 (02)
:104-111

论文数: 引用数:
h-index:
机构:

Buron, Line Due
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Denmark, Dept Syst Biol, Ctr Microbial Biotechnol, DK-2800 Lyngby, Denmark Univ Copenhagen, Fac Life Sci, Dept Plant Biol & Biotechnol, VKR Res Ctr Proact Plants, DK-1871 Copenhagen C, Denmark

Salomonsen, Bo
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Copenhagen, Fac Life Sci, Dept Plant Biol & Biotechnol, VKR Res Ctr Proact Plants, DK-1871 Copenhagen C, Denmark Univ Copenhagen, Fac Life Sci, Dept Plant Biol & Biotechnol, VKR Res Ctr Proact Plants, DK-1871 Copenhagen C, Denmark

论文数: 引用数:
h-index:
机构:

Hansen, Bjarne Gram
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Denmark, Dept Syst Biol, Ctr Microbial Biotechnol, DK-2800 Lyngby, Denmark Univ Copenhagen, Fac Life Sci, Dept Plant Biol & Biotechnol, VKR Res Ctr Proact Plants, DK-1871 Copenhagen C, Denmark

Mortensen, Uffe Hasbro
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Denmark, Dept Syst Biol, Ctr Microbial Biotechnol, DK-2800 Lyngby, Denmark Univ Copenhagen, Fac Life Sci, Dept Plant Biol & Biotechnol, VKR Res Ctr Proact Plants, DK-1871 Copenhagen C, Denmark

Halkier, Barbara Ann
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Copenhagen, Fac Life Sci, Dept Plant Biol & Biotechnol, VKR Res Ctr Proact Plants, DK-1871 Copenhagen C, Denmark Univ Copenhagen, Fac Life Sci, Dept Plant Biol & Biotechnol, VKR Res Ctr Proact Plants, DK-1871 Copenhagen C, Denmark
[44]
Yeast cell factories on the horizon
[J].
Nielsen, Jens
.
SCIENCE,
2015, 349 (6252)
:1050-1051

Nielsen, Jens
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Biol & Biol Engn, SE-41296 Gothenburg, Sweden
Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, DK-2970 Horsholm, Denmark
Royal Inst Technol, Sci Life Lab, SE-17121 Stockholm, Sweden Chalmers Univ Technol, Dept Biol & Biol Engn, SE-41296 Gothenburg, Sweden
[45]
Synthetic Biology for Engineering Acetyl Coenzyme A Metabolism in Yeast
[J].
Nielsen, Jens
.
MBIO,
2014, 5 (06)

Nielsen, Jens
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Biol & Biol Engn, S-41296 Gothenburg, Sweden
Tech Univ Denmark, Novo Nordisk Fdn Ctr Biosustainabil, Horsholm, Denmark Chalmers Univ Technol, Dept Biol & Biol Engn, S-41296 Gothenburg, Sweden
[46]
Engineering synergy in biotechnology
[J].
Nielsen, Jens
;
Fussenegger, Martin
;
Keasling, Jay
;
Lee, Sang Yup
;
Liao, James C.
;
Prather, Kristala
;
Palsson, Bernhard
.
NATURE CHEMICAL BIOLOGY,
2014, 10 (05)
:319-322

Nielsen, Jens
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, Horsholm, Denmark
Chalmers Univ Technol, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden
Royal Inst Technol, Sci Life Lab, Solna, Sweden Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, Horsholm, Denmark

Fussenegger, Martin
论文数: 0 引用数: 0
h-index: 0
机构:
Swiss Fed Inst Technol, Dept Biosyst Sci & Engn, Basel, Switzerland Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, Horsholm, Denmark

Keasling, Jay
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, Horsholm, Denmark
Joint Bioenergy Inst, Emeryville, CA USA
Univ Calif Berkeley, Dept Chem & Biomol Engn, Berkeley, CA 94720 USA
Univ Calif Berkeley, Dept Bioengn, Berkeley, CA 94720 USA
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA 94720 USA
Synthet Biol Engn Res Ctr SynBERC, Berkeley, CA USA Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, Horsholm, Denmark

Lee, Sang Yup
论文数: 0 引用数: 0
h-index: 0
机构:
Korea Adv Inst Sci & Technol, Dept Chem & Biomol Engn, Taejon 305701, South Korea
Univ Calif San Diego, Dept Bioengn, La Jolla, CA 92093 USA Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, Horsholm, Denmark

Liao, James C.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Los Angeles, Dept Chem & Biomol Engn, Los Angeles, CA USA Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, Horsholm, Denmark

Prather, Kristala
论文数: 0 引用数: 0
h-index: 0
机构:
MIT, Dept Chem Engn, Cambridge, MA 02139 USA
Synthet Biol Engn Res Ctr SynBERC, Cambridge, MA USA Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, Horsholm, Denmark

Palsson, Bernhard
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, Horsholm, Denmark Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, Horsholm, Denmark
[47]
Metabolic engineering of yeast for production of fuels and chemicals
[J].
Nielsen, Jens
;
Larsson, Christer
;
van Maris, Antonius
;
Pronk, Jack
.
CURRENT OPINION IN BIOTECHNOLOGY,
2013, 24 (03)
:398-404

Nielsen, Jens
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Chem & Biol Engn, SE-41296 Gothenburg, Sweden
Sci Life Lab, SE-17165 Solna, Sweden Chalmers Univ Technol, Dept Chem & Biol Engn, SE-41296 Gothenburg, Sweden

Larsson, Christer
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Chem & Biol Engn, SE-41296 Gothenburg, Sweden Chalmers Univ Technol, Dept Chem & Biol Engn, SE-41296 Gothenburg, Sweden

van Maris, Antonius
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Dept Biotechnol, NL-2628 BC Delft, Netherlands
Kluyver Ctr Genom Ind Fermentat, NL-2628 BC Delft, Netherlands Chalmers Univ Technol, Dept Chem & Biol Engn, SE-41296 Gothenburg, Sweden

论文数: 引用数:
h-index:
机构:
[48]
Synergies between synthetic biology and metabolic engineering
[J].
Nielsen, Jens
;
Keasling, Jay D.
.
NATURE BIOTECHNOLOGY,
2011, 29 (08)
:693-695

Nielsen, Jens
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden Chalmers, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden

Keasling, Jay D.
论文数: 0 引用数: 0
h-index: 0
机构:
Joint Bioenergy Inst, Emeryville, CA USA
Univ Calif Berkeley, Dept Chem & Biomol Engn, Dept Bioengn, Berkeley, CA 94720 USA
Univ Calif Berkeley, Lawrence Berkeley Lab, Phys Biosci Div, Berkeley, CA 94720 USA Chalmers, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden
[49]
Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors
[J].
Osterlund, Tobias
;
Bordel, Sergio
;
Nielsen, Jens
.
INTEGRATIVE BIOLOGY,
2015, 7 (05)
:560-568

Osterlund, Tobias
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Chem & Biol Engn, Novo Nordisk Fdn Ctr Biosustainabil, SE-41296 Gothenburg, Sweden Chalmers Univ Technol, Dept Chem & Biol Engn, Novo Nordisk Fdn Ctr Biosustainabil, SE-41296 Gothenburg, Sweden

Bordel, Sergio
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Chem & Biol Engn, Novo Nordisk Fdn Ctr Biosustainabil, SE-41296 Gothenburg, Sweden Chalmers Univ Technol, Dept Chem & Biol Engn, Novo Nordisk Fdn Ctr Biosustainabil, SE-41296 Gothenburg, Sweden

Nielsen, Jens
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Chem & Biol Engn, Novo Nordisk Fdn Ctr Biosustainabil, SE-41296 Gothenburg, Sweden
Tech Univ Denmark, Novo Nordisk Fdn Ctr Biosustainabil, DK-2970 Horsholm, Denmark Chalmers Univ Technol, Dept Chem & Biol Engn, Novo Nordisk Fdn Ctr Biosustainabil, SE-41296 Gothenburg, Sweden
[50]
Industrial Systems Biology of Saccharomyces cerevisiae Enables Novel Succinic Acid Cell Factory
[J].
Otero, Jose Manuel
;
Cimini, Donatella
;
Patil, Kiran R.
;
Poulsen, Simon G.
;
Olsson, Lisbeth
;
Nielsen, Jens
.
PLOS ONE,
2013, 8 (01)

Otero, Jose Manuel
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden
Tech Univ Denmark, Dept Syst Biol, Ctr Microbial Biotechnol, DK-2800 Lyngby, Denmark Chalmers Univ Technol, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden

Cimini, Donatella
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Naples 2, Dept Expt Med, Naples, Italy Chalmers Univ Technol, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden

Patil, Kiran R.
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Denmark, Dept Syst Biol, Ctr Microbial Biotechnol, DK-2800 Lyngby, Denmark Chalmers Univ Technol, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden

Poulsen, Simon G.
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Denmark, Dept Syst Biol, Ctr Microbial Biotechnol, DK-2800 Lyngby, Denmark Chalmers Univ Technol, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden

Olsson, Lisbeth
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden
Tech Univ Denmark, Dept Syst Biol, Ctr Microbial Biotechnol, DK-2800 Lyngby, Denmark Chalmers Univ Technol, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden

Nielsen, Jens
论文数: 0 引用数: 0
h-index: 0
机构:
Chalmers Univ Technol, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden
Tech Univ Denmark, Dept Syst Biol, Ctr Microbial Biotechnol, DK-2800 Lyngby, Denmark Chalmers Univ Technol, Dept Chem & Biol Engn, S-41296 Gothenburg, Sweden