Automated electron microscopy for evaluating two-dimensional crystallization of membrane proteins

被引:24
作者
Hu, Minghui [2 ]
Vink, Martin [2 ,3 ]
Kim, Changki [2 ]
Derr, K. D. [2 ]
Koss, John [4 ]
D'Amico, Kevin [4 ]
Cheng, Anchi [5 ]
Pulokas, James [5 ]
Ubarretxena-Belandia, Iban [3 ]
Stokes, David [1 ,2 ,6 ]
机构
[1] NYU, Sch Med, Skirball Inst, Dept Cell Biol, New York, NY 10016 USA
[2] New York Struct Biol Ctr, New York, NY 10027 USA
[3] Mt Sinai Sch Med, Dept Struct & Chem Biol, New York, NY 10029 USA
[4] JKD Instruments LLC, Hinsdale, IL 60521 USA
[5] Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA
[6] NYU, Sch Med, Skirball Inst Biomol Med, New York, NY 10016 USA
基金
美国国家科学基金会;
关键词
Automation; Crystallography; Electron microscopy; Membrane protein; Protein structure; Structural genomics; Two-dimensional crystal; 2D CRYSTALLIZATION; ACQUISITION-SYSTEM; DATA-COLLECTION; TOMOGRAPHY; LEGINON; CRYSTALLOGRAPHY; CRYSTALS;
D O I
10.1016/j.jsb.2010.02.018
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Membrane proteins fulfill many important roles in the cell and represent the target for a large number of therapeutic drugs. Although structure determination of membrane proteins has become a major priority, it has proven to be technically challenging. Electron microscopy of two-dimensional (2D) crystals has the advantage of visualizing membrane proteins in their natural lipidic environment, but has been underutilized in recent structural genomics efforts. To improve the general applicability of electron crystallography, high-throughput methods are needed for screening large numbers of conditions for 2D crystallization, thereby increasing the chances of obtaining well ordered crystals and thus achieving atomic resolution. Previous reports describe devices for growing 2D crystals on a 96-well format. The current report describes a system for automated imaging of these screens with an electron microscope. Samples are inserted with a two-part robot: a SCARA robot for loading samples into the microscope holder, and a Cartesian robot for placing the holder into the electron microscope. A standard JEOL 1230 electron microscope was used, though a new tip was designed for the holder and a toggle switch controlling the airlock was rewired to allow robot control. A computer program for controlling the robots was integrated with the Leginon program, which provides a module for automated imaging of individual samples. The resulting images are uploaded into the Sesame laboratory information management system database where they are associated with other data relevant to the crystallization screen. (C) 2010 Elsevier Inc. All rights reserved.
引用
收藏
页码:102 / 110
页数:9
相关论文
共 25 条
[1]   3-DIMENSIONAL STRUCTURE DETERMINATION BY ELECTRON-MICROSCOPY OF TWO-DIMENSIONAL CRYSTALS [J].
AMOS, LA ;
HENDERSON, R ;
UNWIN, PNT .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 1983, 39 (03) :183-231
[2]   Towards automated screening of two-dimensional crystals [J].
Cheng, Anchi ;
Leung, Albert ;
Fellmann, Denis ;
Quispe, Joel ;
Suloway, Christian ;
Pulokas, James ;
Abeyrathne, Priyanka D. ;
Lam, Joseph S. ;
Carragher, Bridget ;
Potter, Clinton S. .
JOURNAL OF STRUCTURAL BIOLOGY, 2007, 160 (03) :324-331
[3]   Revival of electron crystallography [J].
Hite, Richard K. ;
Raunser, Stefan ;
Walz, Thomas .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2007, 17 (04) :389-395
[4]  
IACOVACHE I, 2009, J STRUCT BIOL, P13704
[5]   2D CRYSTALLIZATION - FROM ART TO SCIENCE [J].
JAP, BK ;
ZULAUF, M ;
SCHEYBANI, T ;
HEFTI, A ;
BAUMEISTER, W ;
AEBI, U ;
ENGEL, A .
ULTRAMICROSCOPY, 1992, 46 (1-4) :45-84
[6]   High-throughput crystallography for structural genomics [J].
Joachimiak, Andrzej .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2009, 19 (05) :573-584
[7]  
KIM C, J FUNCT STRUCT UNPUB, P13704
[8]   emScope: A tool kit for control and automation of a remote electron microscope [J].
Kisseberth, N ;
Whittaker, M ;
Weber, D ;
Potter, CS ;
Carragher, B .
JOURNAL OF STRUCTURAL BIOLOGY, 1997, 120 (03) :309-319
[9]   AUTOMATED MICROSCOPY FOR ELECTRON TOMOGRAPHY [J].
KOSTER, AJ ;
CHEN, H ;
SEDAT, JW ;
AGARD, DA .
ULTRAMICROSCOPY, 1992, 46 (1-4) :207-227
[10]   Appion: An integrated, database-driven pipeline to facilitate EM image processing [J].
Lander, Gabriel C. ;
Stagg, Scott M. ;
Voss, Neil R. ;
Cheng, Anchi ;
Fellmann, Denis ;
Pulokas, James ;
Yoshioka, Craig ;
Irving, Christopher ;
Mulder, Anke ;
Lau, Pick-Wei ;
Lyumkis, Dmitry ;
Potter, Clinton S. ;
Carragher, Bridget .
JOURNAL OF STRUCTURAL BIOLOGY, 2009, 166 (01) :95-102