Transcriptomic analysis of endometrial receptivity for a genomic diagnostics model of Chinese women

被引:17
作者
Zhang, Wen-bi [1 ]
Li, Qing [2 ]
Liu, Hu [2 ]
Chen, Wei-jian [2 ]
Zhang, Chun-lei [2 ]
Li, He [1 ]
Lu, Xiang [1 ]
Chen, Jun-ling [1 ]
Li, Lu [1 ]
Wu, Han [2 ]
Sun, Xiao-xi [1 ,3 ]
机构
[1] Fudan Univ, Shanghai Ji Ai Genet & IVF Inst, Obstet & Gynecol Hosp, 352 Lin Rd, Shanghai 200011, Peoples R China
[2] Unimed Biotech Shanghai Co Ltd, Shanghai, Peoples R China
[3] Fudan Univ, Obstet & Gynecol Hosp, Key Lab Female Reprod Endocrine Related Dis, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
Endometrial receptivity; next-generation sequencing; RNA-Seq; transcriptomic feature; RECURRENT IMPLANTATION FAILURE; GENE-EXPRESSION; TRANSITION; ABUNDANCE; ARRAY;
D O I
10.1016/j.fertnstert.2020.11.010
中图分类号
R71 [妇产科学];
学科分类号
100211 ;
摘要
Objective: To define the transcriptomic signature with respect to human endometrial receptivity in Chinese women by next-generation sequencing and to develop a more refined and customized bioinformatic predictive method for endometrial dating in Chinese women. Design: Randomized. Setting: A tertiary hospital-based reproductive medicine center. Patient(s): Ninety healthy, fertile Chinese women. Intervention(s): Human endometrial biopsies. Main Outcome Measure(s): Gene expression of endometrial biopsies. Result(s): Ninety endometrial samples from healthy Chinese women during their menstrual cycles-including prereceptive (luteinizing hormone [LH] + 3 days/LH + 5 days), receptive (LH + 7 days), and post-receptive (LH + 9 days) phases-were subjected to transcriptomic analysis using messenger RNA (mRNA)-enriched RNA-Seq. Feature genes were obtained and used to train the predictor for endometrial dating, with 63 samples for the training set and 27 samples for the validation set. Differentially expressed genes (DEGs) were identified by comparing samples from different phases of the menstrual cycle. Based on the transcriptomic feature genes, we constructed a bioinformatic predictor for endometrial dating. The accuracy on assessment of the endometrium on days LH + 3, LH + 5, LH + 7, and LH + 9 was 100% in the training set and 85.19% in the validation set. Conclusion(s): Our transcriptomic profiling method can be used to monitor the window of implantation with regard to the endometrium in the Chinese population. This method potentially provides an evaluation of endometrial status, and can be used to predict a personal window of implantation by reproductive medicine clinicians. ((C) 2020 by American Society for Reproductive Medicine.)
引用
收藏
页码:157 / 164
页数:8
相关论文
共 36 条
[1]   Endometrial receptivity markers, the journey to successful embryo implantation [J].
Achache, Hanna ;
Revel, Ariel .
HUMAN REPRODUCTION UPDATE, 2006, 12 (06) :731-746
[2]   Meta-signature of human endometrial receptivity: a meta-analysis and validation study of transcriptomic biomarkers [J].
Altmae, Signe ;
Koel, Mariann ;
Vosa, Urmo ;
Adler, Priit ;
Suhorutsenko, Marina ;
Laisk-Podar, Triin ;
Kukushkina, Viktorija ;
Saare, Merli ;
Velthut-Meikas, Agne ;
Krjutskov, Kaarel ;
Aghajanova, Lusine ;
Lalitkumar, Parameswaran G. ;
Gemzell-Danielsson, Kristina ;
Giudice, Linda ;
Simon, Carlos ;
Salumets, Andres .
SCIENTIFIC REPORTS, 2017, 7
[3]   Ancestry patterns inferred from massive RNA-seq data [J].
Barral-Arca, Ruth ;
Pardo-Seco, Jacobo ;
Bello, Xabi ;
Martinon-Torres, Federico ;
Salas, Antonio .
RNA, 2019, 25 (07) :857-868
[4]   Changes in gene expression during the early to mid-luteal (receptive phase) transition in human endometrium detected by high-density microarray screening [J].
Carson, DD ;
Lagow, E ;
Thathiah, A ;
Al-Shami, R ;
Farach-Carson, MC ;
Vernon, M ;
Yuan, LW ;
Fritz, MA ;
Lessey, B .
MOLECULAR HUMAN REPRODUCTION, 2002, 8 (09) :871-879
[5]   Embryo implantation [J].
Carson, DD ;
Bagchi, I ;
Dey, SK ;
Enders, AC ;
Fazleabas, AT ;
Lessey, BA ;
Yoshinaga, K .
DEVELOPMENTAL BIOLOGY, 2000, 223 (02) :217-237
[6]   Recurrent implantation failure: definition and management [J].
Coughlan, C. ;
Ledger, W. ;
Wang, Q. ;
Liu, Fenghua ;
Demirol, Aygul ;
Gurgan, Timur ;
Cutting, R. ;
Ong, K. ;
Sallam, H. ;
Li, T. C. .
REPRODUCTIVE BIOMEDICINE ONLINE, 2014, 28 (01) :14-38
[7]   The accuracy and reproducibility of the endometrial receptivity array is superior to histology as a diagnostic method for endometrial receptivity [J].
Diaz-Gimeno, Patricia ;
Ruiz-Alonso, Maria ;
Blesa, David ;
Bosch, Nuria ;
Martinez-Conejero, Jose A. ;
Alama, Pilar ;
Garrido, Nicolas ;
Pellicer, Antonio ;
Simon, Carlos .
FERTILITY AND STERILITY, 2013, 99 (02) :508-517
[8]   A genomic diagnostic tool for human endometrial receptivity based on the transcriptomic signature [J].
Diaz-Gimeno, Patricia ;
Horcajadas, Jose A. ;
Martinez-Conejero, Jose A. ;
Esteban, Francisco J. ;
Alama, Pilar ;
Pellicer, Antonio ;
Simon, Carlos .
FERTILITY AND STERILITY, 2011, 95 (01) :50-U611
[9]   STAR: ultrafast universal RNA-seq aligner [J].
Dobin, Alexander ;
Davis, Carrie A. ;
Schlesinger, Felix ;
Drenkow, Jorg ;
Zaleski, Chris ;
Jha, Sonali ;
Batut, Philippe ;
Chaisson, Mark ;
Gingeras, Thomas R. .
BIOINFORMATICS, 2013, 29 (01) :15-21
[10]   Identification of new biomarkers of human endometrial receptivity in the natural cycle [J].
Haouzi, D. ;
Mahmoud, K. ;
Fourar, M. ;
Bendhaou, K. ;
Dechaud, H. ;
De Vos, J. ;
Reme, T. ;
Dewailly, D. ;
Hamamah, S. .
HUMAN REPRODUCTION, 2009, 24 (01) :198-205